Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C5097_RS15145 Genome accession   NZ_CP027105
Coordinates   2837011..2838438 (+) Length   475 a.a.
NCBI ID   WP_086625603.1    Uniprot ID   -
Organism   Escherichia coli strain RM14721     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2832011..2843438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5097_RS25345 (C5097_15095) - 2832201..2832548 (+) 348 WP_001333417.1 IS110 family transposase -
  C5097_RS25710 - 2832820..2833185 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  C5097_RS15125 (C5097_15110) tmaR 2833286..2833615 (-) 330 WP_000450409.1 DUF496 family protein -
  C5097_RS15130 (C5097_15115) yeeA 2833787..2834845 (-) 1059 WP_001200892.1 FUSC family protein -
  C5097_RS15135 (C5097_15120) sbmC 2835044..2835517 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  C5097_RS15140 (C5097_15125) dacD 2835636..2836802 (-) 1167 WP_086625604.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C5097_RS15145 (C5097_15130) sbcB 2837011..2838438 (+) 1428 WP_086625603.1 exodeoxyribonuclease I Machinery gene
  C5097_RS15150 (C5097_15135) tsuB 2838481..2838708 (-) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C5097_RS15155 (C5097_15140) tsuA 2838722..2839780 (-) 1059 WP_000492318.1 thiosulfate utilization transporter TsuA/YeeE -
  C5097_RS15160 (C5097_15145) plaP 2839959..2841317 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C5097_RS15165 (C5097_15150) yoeI 2841307..2841369 (-) 63 WP_010723108.1 membrane protein YoeI -
  C5097_RS15170 (C5097_15155) yeeY 2841584..2842513 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C5097_RS15175 (C5097_15160) yeeZ 2842559..2843383 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54489.75 Da        Isoelectric Point: 5.4720

>NTDB_id=230125 C5097_RS15145 WP_086625603.1 2837011..2838438(+) (sbcB) [Escherichia coli strain RM14721]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETESRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=230125 C5097_RS15145 WP_086625603.1 2837011..2838438(+) (sbcB) [Escherichia coli strain RM14721]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGTCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.298

98.947

0.577