Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GBS_RS00265 Genome accession   NC_004368
Coordinates   32683..33444 (+) Length   253 a.a.
NCBI ID   WP_001266275.1    Uniprot ID   Q8E2G8
Organism   Streptococcus agalactiae NEM316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27683..38444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS00250 (gbs0016) pcsB 28975..30318 (+) 1344 WP_000746078.1 peptidoglycan hydrolase PcsB -
  GBS_RS00255 (gbs0017) - 30442..31410 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  GBS_RS00260 (gbs0018) - 31518..32693 (+) 1176 WP_000171455.1 pyridoxal phosphate-dependent aminotransferase -
  GBS_RS00265 (gbs0019) recO 32683..33444 (+) 762 WP_001266275.1 DNA repair protein RecO Machinery gene
  GBS_RS00270 (gbs0020) - 33507..34385 (+) 879 WP_000420131.1 CPBP family intramembrane glutamic endopeptidase -
  GBS_RS00275 (gbs0021) plsX 34463..35455 (+) 993 WP_000716823.1 phosphate acyltransferase PlsX -
  GBS_RS00280 - 35466..35705 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  GBS_RS00285 (gbs0023) purC 35829..36533 (+) 705 WP_001064659.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29684.10 Da        Isoelectric Point: 6.2989

>NTDB_id=23008 GBS_RS00265 WP_001266275.1 32683..33444(+) (recO) [Streptococcus agalactiae NEM316]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRVGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=23008 GBS_RS00265 WP_001266275.1 32683..33444(+) (recO) [Streptococcus agalactiae NEM316]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGTAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E2G8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628

Multiple sequence alignment