Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C5099_RS14890 Genome accession   NZ_CP027103
Coordinates   2811838..2813265 (+) Length   475 a.a.
NCBI ID   WP_000980569.1    Uniprot ID   A0A0H3ELL6
Organism   Escherichia coli strain RM14723     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2806838..2818265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5099_RS14860 (C5099_14845) pduU 2807216..2807566 (+) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -
  C5099_RS14865 (C5099_14850) - 2807571..2808014 (+) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  C5099_RS14870 (C5099_14855) tmaR 2808115..2808444 (-) 330 WP_000450409.1 DUF496 family protein -
  C5099_RS14875 (C5099_14860) yeeA 2808615..2809673 (-) 1059 WP_001358090.1 FUSC family protein -
  C5099_RS14880 (C5099_14865) sbmC 2809871..2810344 (-) 474 WP_001105373.1 DNA gyrase inhibitor SbmC -
  C5099_RS14885 (C5099_14870) dacD 2810463..2811629 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C5099_RS14890 (C5099_14875) sbcB 2811838..2813265 (+) 1428 WP_000980569.1 exodeoxyribonuclease I Machinery gene
  C5099_RS14895 (C5099_14880) plaP 2813339..2814697 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  C5099_RS14900 (C5099_14885) yoeI 2814687..2814749 (-) 63 WP_097433929.1 membrane protein YoeI -
  C5099_RS14905 (C5099_14890) yeeY 2814964..2815893 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  C5099_RS14910 (C5099_14895) yeeZ 2815939..2816763 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  C5099_RS14915 (C5099_14900) yoeB 2816846..2817100 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  C5099_RS14920 (C5099_14905) yefM 2817097..2817348 (-) 252 WP_001358091.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  C5099_RS14925 (C5099_14910) hisL 2817631..2817681 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54499.79 Da        Isoelectric Point: 5.4720

>NTDB_id=230047 C5099_RS14890 WP_000980569.1 2811838..2813265(+) (sbcB) [Escherichia coli strain RM14723]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=230047 C5099_RS14890 WP_000980569.1 2811838..2813265(+) (sbcB) [Escherichia coli strain RM14723]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCTCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTACGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3ELL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment