Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AB895_RS05675 Genome accession   NZ_CP021342
Coordinates   1186515..1186940 (-) Length   141 a.a.
NCBI ID   WP_000788337.1    Uniprot ID   A0A009SG52
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1181515..1191940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS05645 (AB895_1146) - 1182047..1183078 (+) 1032 WP_001189457.1 lipase secretion chaperone -
  AB895_RS05650 (AB895_1147) - 1183193..1184134 (+) 942 WP_086321537.1 triacylglycerol lipase -
  AB895_RS05655 (AB895_1148) rplS 1184187..1184555 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  AB895_RS05660 (AB895_1149) trmD 1184763..1185503 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AB895_RS05665 (AB895_1150) rimM 1185549..1186097 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  AB895_RS05670 (AB895_1151) rpsP 1186117..1186368 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  AB895_RS05675 (AB895_1152) pilE 1186515..1186940 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AB895_RS05680 (AB895_1153) pilY2 1186937..1187419 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AB895_RS05685 (AB895_1154) pilY1 1187432..1191286 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15163.36 Da        Isoelectric Point: 7.8144

>NTDB_id=230034 AB895_RS05675 WP_000788337.1 1186515..1186940(-) (pilE) [Acinetobacter baumannii strain B8342]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=230034 AB895_RS05675 WP_000788337.1 1186515..1186940(-) (pilE) [Acinetobacter baumannii strain B8342]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCATTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009SG52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.78

100

0.908
  comF Acinetobacter baylyi ADP1

50

99.291

0.496

Multiple sequence alignment