Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AB895_RS04955 Genome accession   NZ_CP021342
Coordinates   1053817..1054701 (-) Length   294 a.a.
NCBI ID   WP_024437029.1    Uniprot ID   A0A009TCU6
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1048817..1059701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS04940 (AB895_1002) miaB 1050664..1052115 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB895_RS04945 (AB895_1003) - 1052153..1053241 (+) 1089 WP_000122983.1 PhoH family protein -
  AB895_RS04950 (AB895_1004) ybeY 1053251..1053727 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  AB895_RS04955 (AB895_1005) tonB2 1053817..1054701 (-) 885 WP_024437029.1 energy transducer TonB Machinery gene
  AB895_RS04960 (AB895_1006) - 1054932..1055603 (+) 672 WP_001193961.1 hypothetical protein -
  AB895_RS04965 (AB895_1007) - 1055761..1056474 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  AB895_RS04970 (AB895_1008) - 1056547..1057122 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  AB895_RS04975 (AB895_1009) wrbA 1057175..1057768 (-) 594 WP_001183358.1 NAD(P)H:quinone oxidoreductase -
  AB895_RS04980 (AB895_1010) - 1058056..1059303 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33649.60 Da        Isoelectric Point: 9.6000

>NTDB_id=230031 AB895_RS04955 WP_024437029.1 1053817..1054701(-) (tonB2) [Acinetobacter baumannii strain B8342]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREVHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRKLKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=230031 AB895_RS04955 WP_024437029.1 1053817..1054701(-) (tonB2) [Acinetobacter baumannii strain B8342]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCCCAAGCTGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGTTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAAAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATCATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TCU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment