Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MTMN5_RS04035 Genome accession   NZ_CP021333
Coordinates   878299..879687 (+) Length   462 a.a.
NCBI ID   WP_126810575.1    Uniprot ID   -
Organism   Marinobacter salarius strain HL2708#2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 873299..884687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTMN5_RS04020 (MTMN5_00810) - 873980..874816 (+) 837 WP_041336829.1 outer membrane protein assembly factor BamD -
  MTMN5_RS04025 (MTMN5_00811) - 874861..876513 (-) 1653 WP_126810573.1 NAD+ synthase -
  MTMN5_RS04030 (MTMN5_00812) - 876599..878245 (+) 1647 WP_126810574.1 PAS domain-containing sensor histidine kinase -
  MTMN5_RS04035 (MTMN5_00813) pilR 878299..879687 (+) 1389 WP_126810575.1 sigma-54 dependent transcriptional regulator Regulator
  MTMN5_RS04040 (MTMN5_00814) - 879809..880381 (+) 573 WP_164732081.1 GspH/FimT family pseudopilin -
  MTMN5_RS04045 (MTMN5_00815) - 880538..881023 (+) 486 WP_052479561.1 GspH/FimT family pseudopilin -
  MTMN5_RS04050 (MTMN5_00816) pilV 881032..881514 (+) 483 WP_052479560.1 type IV pilus modification protein PilV -
  MTMN5_RS04055 (MTMN5_00817) - 881517..882644 (+) 1128 WP_126810576.1 PilW family protein -
  MTMN5_RS04060 (MTMN5_00818) - 882644..883159 (+) 516 WP_126810577.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50797.86 Da        Isoelectric Point: 4.7936

>NTDB_id=229963 MTMN5_RS04035 WP_126810575.1 878299..879687(+) (pilR) [Marinobacter salarius strain HL2708#2]
MTTHTALIVDDEPDIRDLLEITLSRMGITTLTAPDITCAKKLLGEHKPQLCLTDMNLPDGNGIELVQWIQQNTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALRLSEAEANTQDTDDEPGLLLGKSTEIQKLRSQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRRDGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSVGDTKEVPVDIRVLSATHKNLPDLVQEGIFRQDLFYRINVIELAVPPLRERPDDISLLA
RHILERIGKEYECEPASLTQGAIGRLKQYDFPGNVRELENVLERAFTLCDADQIDAGDLHLGNGVQTASSPTQVIAEGEA
NDDGTAPVPDGEIDLENYLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=229963 MTMN5_RS04035 WP_126810575.1 878299..879687(+) (pilR) [Marinobacter salarius strain HL2708#2]
ATGACCACTCATACCGCCCTGATCGTAGACGACGAACCCGATATCCGGGACCTTCTGGAAATCACACTCAGCCGTATGGG
AATAACAACCCTGACCGCGCCAGACATCACCTGCGCGAAGAAGCTTCTGGGTGAACACAAACCACAACTCTGCCTGACAG
ACATGAACCTGCCCGATGGCAACGGCATCGAGCTTGTGCAGTGGATACAGCAGAATACGCCCTGTACCCCTGTGGCTGTA
ATCACGGCCTACGGCAACATGGATACGGCCATTGAATCCCTGAAGGCCGGTGCCTTCGATTTTGTGTCCAAGCCGGTTGA
GCTTCCGCGGCTTCGGGAGCTGGTCAACAGTGCTCTCCGGTTGTCGGAGGCCGAAGCCAACACTCAGGACACTGACGATG
AACCGGGTCTGTTACTCGGCAAATCAACAGAAATTCAAAAACTCCGAAGCCAAACTCGGAAACTGGCCAGAAGCCAGGCA
CCCGTTTTCATCAGCGGGGAATCGGGTAGCGGTAAAGAACTGGTCGCAAGAATGATTCATTTGCAGGGTCCTCGCCGCGA
CGGTCCCTTTATAGCTGTCAACTGTGGAGCCATCCCCTCTGAACTCATGGAGAGTGAATTTTTTGGGCACAAAAAGGGCA
GCTTTACCGGGGCCGTTGAAAACAAAGACGGCCTGTTTCGATCTGCCAACGGTGGCACTTTGTTTCTGGACGAAGTTGCT
GACCTGCCTCTGGCAATGCAGGTAAAACTCCTGAGGGCAATTCAGGAAAAGGCTGTCCGCTCGGTTGGCGATACCAAGGA
AGTTCCGGTGGATATCCGGGTACTAAGCGCGACCCATAAGAACCTTCCAGATCTGGTTCAGGAAGGCATTTTTCGGCAAG
ACCTTTTCTACCGGATCAACGTCATTGAACTGGCTGTGCCTCCTCTGCGGGAACGACCAGACGACATTTCCTTGCTTGCT
CGCCACATTCTCGAAAGAATCGGTAAAGAATATGAATGCGAACCCGCCTCGCTAACCCAGGGCGCCATCGGGCGGCTCAA
ACAGTACGATTTCCCGGGCAACGTAAGGGAACTCGAAAATGTTCTGGAGCGCGCCTTTACGCTTTGCGATGCCGATCAAA
TTGATGCCGGCGATCTGCACCTGGGAAATGGTGTACAGACGGCGTCGTCTCCCACCCAGGTTATCGCGGAAGGCGAGGCC
AACGATGACGGGACTGCCCCGGTGCCCGATGGCGAGATTGACCTGGAAAACTACCTGGAGAACATAGAGAGACAAGCCAT
CGAGAAGGCTCTGGAAGCCACCCGATGGAATAAAACGGCGGCCGCTAAGCGTCTGGGAATCAGCTTTCGAGCGCTTCGGT
ACCGCCTCAAGAAGCTGGGAATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

100

0.634
  pilR Acinetobacter baumannii strain A118

53.696

99.567

0.535

Multiple sequence alignment