Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C5L38_RS23205 Genome accession   NZ_CP027022
Coordinates   5107197..5109080 (+) Length   627 a.a.
NCBI ID   WP_104860539.1    Uniprot ID   -
Organism   Streptomyces sp. WAC00288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5102197..5114080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS23180 (C5L38_23185) - 5102379..5103164 (+) 786 WP_062755873.1 TSUP family transporter -
  C5L38_RS23185 (C5L38_23190) - 5103169..5103798 (-) 630 WP_062755876.1 class F sortase -
  C5L38_RS23190 (C5L38_23195) - 5103962..5104492 (-) 531 WP_062755878.1 hypothetical protein -
  C5L38_RS23195 (C5L38_23200) - 5104804..5105454 (+) 651 WP_104860538.1 NAD(P)H-dependent oxidoreductase -
  C5L38_RS23200 (C5L38_23205) rcrP 5105467..5107200 (+) 1734 WP_062755882.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23205 (C5L38_23210) rcrQ 5107197..5109080 (+) 1884 WP_104860539.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23210 (C5L38_23215) cutA 5109077..5109799 (+) 723 WP_062755884.1 divalent cation tolerance protein CutA -
  C5L38_RS23215 (C5L38_23220) - 5109854..5111950 (-) 2097 WP_062755886.1 molybdopterin oxidoreductase family protein -
  C5L38_RS23220 (C5L38_23225) - 5112119..5112808 (-) 690 WP_062755888.1 ElyC/SanA/YdcF family protein -
  C5L38_RS23225 (C5L38_23230) - 5112843..5113565 (-) 723 WP_062755890.1 aquaporin -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 66930.55 Da        Isoelectric Point: 6.9022

>NTDB_id=229902 C5L38_RS23205 WP_104860539.1 5107197..5109080(+) (rcrQ) [Streptomyces sp. WAC00288]
MTTTTEPRDKAPTAPARTGPPRQTGPGPGSGPGTPSLERSLSFRTSGLRLLRTLAPDRALLVALLAAGATGVALSVLAPL
FLGRATDLVVTGVTRPAGVDFAAVGRVLALSAAVVLGSSVFIWLQQRIATTVVQRAGHRLRERAQHKLARLPLSHLDRQP
RGEVLSRTTNDIDNITQTLQQAFSQMVRALLTLVGVLAMMFWISPPLALVALGTVPVSLAVAALVGRRAQPQFVKQWAVT
GRLGGHVEEMVTGHTEVVAFGRREEAVRRFDELGEELYRAGFRAQVVSGFIQPALTFVGNLNYVAVAVVGGLRVASGTLT
VGDVQAFVQYSYEFNGPVTQIAAMANLLQSGVASAERVFDLLDAEEETPDPAAPLRPAPVRGRVSFEEVSFRHDPDRPLI
EDLSLTVEPGRTVAVVGPTGAGKTTLVNLLMRFHEPTGGRITLDGVDTAAMTREELRSHTGMVLQDTWLFGGTIAENIAY
GVPGEVSRERIVAAAEAARADRFVRTLPDGYDTVLDEDGGGLSAGEKQLVTLARAFLSDPVVLVLDEATSSVDTRTELLV
QQAMSSLRAGRTSFVVAHRLSTIRDADTILVMERGAIAEQGTHEELLAARGAYARLHAAQFARTVEA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=229902 C5L38_RS23205 WP_104860539.1 5107197..5109080(+) (rcrQ) [Streptomyces sp. WAC00288]
GTGACCACGACCACGGAGCCCCGCGACAAGGCCCCCACCGCCCCCGCCCGCACCGGCCCCCCGCGGCAGACCGGCCCCGG
TCCCGGCTCCGGCCCCGGCACCCCCTCCCTCGAACGCTCCCTCTCCTTCCGCACCTCCGGCCTCCGCCTCCTGCGCACCC
TCGCCCCCGACCGGGCCCTCCTCGTCGCCCTGCTCGCCGCCGGCGCCACCGGCGTCGCCCTCTCCGTCCTCGCCCCCCTC
TTCCTCGGCCGCGCCACCGACCTCGTCGTCACCGGCGTCACCCGCCCCGCCGGGGTCGACTTCGCGGCCGTCGGCCGGGT
CCTCGCCCTCTCCGCCGCCGTCGTCCTCGGCTCCTCCGTCTTCATCTGGCTCCAGCAGCGGATCGCCACCACCGTCGTCC
AGCGCGCCGGACACCGGCTGCGCGAGCGGGCCCAGCACAAGCTGGCCCGGCTGCCCCTCTCCCACCTCGACCGGCAGCCG
CGCGGCGAGGTCCTCTCCCGCACCACCAACGACATCGACAACATCACCCAGACCCTCCAGCAGGCCTTCAGCCAGATGGT
GCGCGCCCTGCTCACCCTGGTCGGCGTCCTCGCGATGATGTTCTGGATCTCCCCGCCGCTCGCCCTCGTCGCCCTCGGCA
CCGTCCCCGTCTCCCTCGCCGTCGCCGCCCTCGTCGGGCGGCGCGCCCAGCCGCAGTTCGTGAAGCAGTGGGCGGTCACG
GGCCGGCTCGGCGGCCACGTCGAGGAGATGGTCACCGGCCACACCGAGGTCGTCGCCTTCGGGCGGCGCGAGGAGGCCGT
GCGCCGCTTCGACGAGCTGGGCGAGGAGCTGTACCGGGCGGGCTTCCGCGCCCAGGTCGTCTCCGGCTTCATCCAGCCCG
CCCTGACCTTCGTCGGCAACCTCAACTACGTGGCCGTCGCCGTGGTCGGCGGACTGCGGGTGGCGAGCGGCACCCTCACC
GTCGGCGACGTTCAGGCCTTCGTCCAGTACTCGTACGAATTCAACGGCCCCGTCACCCAGATCGCCGCCATGGCCAACCT
GCTCCAGTCCGGGGTGGCCTCCGCCGAGCGGGTCTTCGACCTCCTCGACGCCGAGGAGGAGACCCCCGACCCGGCCGCAC
CCCTGCGGCCCGCACCGGTGCGCGGCCGGGTCTCCTTCGAGGAGGTCTCCTTCCGCCACGACCCCGACCGGCCGCTGATC
GAGGACCTGTCCCTGACCGTCGAGCCCGGCCGGACCGTCGCCGTCGTCGGCCCCACCGGCGCCGGCAAGACGACCCTGGT
CAACCTGCTGATGCGCTTCCACGAGCCGACCGGCGGCCGGATCACCCTCGACGGCGTCGACACGGCCGCGATGACCCGCG
AGGAGCTGCGCTCCCACACCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACCATCGCCGAGAACATCGCATAC
GGGGTCCCCGGCGAGGTCTCCCGCGAGCGGATCGTCGCCGCGGCGGAGGCCGCCCGCGCCGACCGGTTCGTCCGCACCCT
GCCCGACGGCTACGACACCGTCCTGGACGAGGACGGCGGCGGCCTCAGCGCCGGCGAGAAGCAGCTCGTCACCCTCGCCC
GGGCCTTCCTCTCCGACCCGGTGGTCCTCGTCCTGGACGAGGCCACCAGCTCCGTCGACACCCGCACCGAACTCCTCGTC
CAGCAGGCCATGTCCTCGCTGCGCGCGGGCCGCACCAGCTTCGTCGTCGCCCACCGGCTCTCCACGATCCGCGACGCCGA
CACCATCCTCGTGATGGAGCGCGGCGCCATCGCCGAGCAGGGCACCCACGAGGAGCTGCTGGCCGCCAGGGGCGCGTACG
CCCGGCTGCACGCGGCCCAGTTCGCCCGTACGGTGGAGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(70-337)

ABC transporter (ABC_tran)

(401-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.591

88.198

0.367

Multiple sequence alignment