Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   C5L38_RS23200 Genome accession   NZ_CP027022
Coordinates   5105467..5107200 (+) Length   577 a.a.
NCBI ID   WP_062755882.1    Uniprot ID   -
Organism   Streptomyces sp. WAC00288     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5100467..5112200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5L38_RS23175 (C5L38_23180) - 5100571..5102160 (+) 1590 WP_234363810.1 ferric reductase-like transmembrane domain-containing protein -
  C5L38_RS35855 - 5102153..5102341 (+) 189 WP_152370023.1 hypothetical protein -
  C5L38_RS23180 (C5L38_23185) - 5102379..5103164 (+) 786 WP_062755873.1 TSUP family transporter -
  C5L38_RS23185 (C5L38_23190) - 5103169..5103798 (-) 630 WP_062755876.1 class F sortase -
  C5L38_RS23190 (C5L38_23195) - 5103962..5104492 (-) 531 WP_062755878.1 hypothetical protein -
  C5L38_RS23195 (C5L38_23200) - 5104804..5105454 (+) 651 WP_104860538.1 NAD(P)H-dependent oxidoreductase -
  C5L38_RS23200 (C5L38_23205) rcrP 5105467..5107200 (+) 1734 WP_062755882.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23205 (C5L38_23210) rcrQ 5107197..5109080 (+) 1884 WP_104860539.1 ABC transporter ATP-binding protein Regulator
  C5L38_RS23210 (C5L38_23215) cutA 5109077..5109799 (+) 723 WP_062755884.1 divalent cation tolerance protein CutA -
  C5L38_RS23215 (C5L38_23220) - 5109854..5111950 (-) 2097 WP_062755886.1 molybdopterin oxidoreductase family protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62238.28 Da        Isoelectric Point: 10.4527

>NTDB_id=229901 C5L38_RS23200 WP_062755882.1 5105467..5107200(+) (rcrP) [Streptomyces sp. WAC00288]
MLFRIVLPRLRPYRPLLALLVGLQLVQTLSSLALPALNAGVIDHGVLRGDTGRVLSGGATMAAVTLLQVAAAAAATWTGA
RIAMGVARDLRSEVFRRVQEFSARERSRFGAASLITRTTNDVQQIQTFTVLVLTMLVAAPLLCVGGIAMALRQDVPLALV
LVLFVPVMTGAVGTVVLRLRPLFRGMQLRVDRTNRILREQITGVRVVRAFVRDRHERERFAAANDELFAVGLRAGRLQAV
MFPTVLVIWELTTVALVYVGAHRIDSGALQPGGLVAFLGYLLQTSMSVMMTLFLLMHMPRAEAGAERVREVLDTRSSVVP
PAHPVRELHGPGRLELDGVGFRYPGAEEPVLHDVRFTARPGETTAIVGSTGSGKSTLLGLVPRLFDATGGRVLVDGADVR
TLDPALLARTVGIVPQKPYLFSGTIASNLRYGKPDATDEELWRALETAQAADFVRELDAGLDAPVAQGGANLSGGQRQRL
AIARVLTAHPRLYLFDDSFSALDAATDARLRAALAEETAGSTVVVVAQRISTVRHADRIVVLDRGRVVATGTHASLLRDD
PTYREIVLSQLTEEEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=229901 C5L38_RS23200 WP_062755882.1 5105467..5107200(+) (rcrP) [Streptomyces sp. WAC00288]
GTGCTGTTCCGGATCGTCCTCCCCCGCCTCCGCCCGTACCGGCCCCTCCTCGCCCTCCTCGTCGGCCTCCAGCTCGTCCA
GACCCTCTCCTCCCTCGCCCTGCCCGCCCTCAACGCCGGCGTCATCGACCACGGCGTCCTGCGCGGGGACACCGGCCGGG
TCCTCTCCGGAGGCGCCACCATGGCCGCCGTCACCCTCCTCCAGGTGGCGGCGGCCGCCGCCGCCACCTGGACCGGCGCC
CGGATCGCCATGGGCGTCGCCCGCGACCTGCGCTCCGAGGTCTTCCGGCGCGTCCAGGAGTTCTCCGCCCGGGAGCGGAG
CCGCTTCGGCGCCGCCTCCCTCATCACCCGCACCACCAACGACGTCCAGCAGATCCAGACGTTCACCGTCCTCGTCCTGA
CGATGCTGGTCGCCGCCCCGCTCCTGTGCGTCGGCGGCATCGCCATGGCCCTGCGCCAGGACGTGCCGCTCGCCCTCGTC
CTCGTCCTCTTCGTGCCCGTGATGACCGGGGCCGTCGGCACCGTCGTGCTGCGCCTGCGGCCCCTCTTCCGGGGCATGCA
GCTCCGCGTCGACCGGACCAACCGGATCCTGCGCGAGCAGATCACCGGCGTCCGGGTCGTCCGCGCCTTCGTCCGCGACC
GGCACGAGCGGGAACGGTTCGCCGCCGCCAACGACGAGCTGTTCGCCGTCGGCCTGCGGGCCGGCCGGTTACAGGCCGTC
ATGTTCCCCACGGTCCTGGTGATCTGGGAACTGACCACCGTCGCCCTGGTGTACGTCGGCGCCCACCGCATCGACTCCGG
CGCCCTCCAGCCGGGCGGGCTCGTCGCCTTCCTCGGCTACCTGCTCCAGACCTCCATGTCCGTGATGATGACCCTCTTCC
TCCTGATGCACATGCCGCGCGCCGAGGCCGGCGCCGAACGCGTCCGCGAGGTCCTCGACACCCGCTCCTCCGTCGTCCCG
CCCGCACACCCGGTCCGCGAGCTCCACGGCCCCGGCCGGCTCGAACTCGACGGCGTCGGCTTCCGGTACCCCGGAGCGGA
GGAACCCGTCCTGCACGACGTCCGGTTCACCGCCCGGCCCGGCGAGACCACCGCGATCGTCGGCTCCACCGGCAGCGGCA
AGTCCACCCTCCTCGGCCTCGTGCCCCGCCTCTTCGACGCCACCGGGGGCCGGGTCCTCGTGGACGGCGCCGACGTCCGC
ACCCTCGACCCCGCCCTCCTGGCGAGGACCGTCGGAATCGTCCCCCAGAAGCCGTACCTCTTCTCGGGCACGATCGCCTC
CAACCTCCGCTACGGGAAGCCAGACGCCACCGACGAGGAGCTGTGGCGGGCCCTGGAGACCGCGCAGGCCGCCGACTTCG
TCCGCGAACTCGACGCGGGCCTCGACGCGCCCGTCGCCCAGGGCGGCGCCAACCTCTCCGGCGGCCAGCGCCAGCGGCTC
GCCATCGCCCGGGTCCTCACCGCCCACCCCCGCCTCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACGCCGCCACCGA
CGCGCGGCTGCGGGCCGCGCTCGCCGAGGAGACGGCCGGCTCCACCGTGGTGGTCGTCGCCCAGCGCATCTCCACCGTCC
GCCACGCCGACCGGATCGTCGTCCTCGACCGGGGGCGGGTCGTCGCCACCGGCACCCACGCGTCCCTCCTGCGGGACGAC
CCCACCTACCGGGAGATCGTCCTCTCCCAGCTCACCGAGGAGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.349

94.454

0.362