Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   SMU_RS04640 Genome accession   NC_004350
Coordinates   963169..963840 (+) Length   223 a.a.
NCBI ID   WP_002263237.1    Uniprot ID   Q8DUD1
Organism   Streptococcus mutans UA159     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 958169..968840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS04630 (SMU.1006) - 960370..961122 (+) 753 WP_002263239.1 ABC transporter ATP-binding protein -
  SMU_RS04635 (SMU.1007) - 961124..963127 (+) 2004 WP_002263238.1 ABC transporter permease -
  SMU_RS04640 (SMU.1008) braR 963169..963840 (+) 672 WP_002263237.1 DNA-binding response regulator Regulator
  SMU_RS04645 (SMU.1009) - 963837..964790 (+) 954 WP_002263236.1 sensor histidine kinase -
  SMU_RS04650 (SMU.1010) citC 964941..965990 (-) 1050 WP_002263235.1 [citrate (pro-3S)-lyase] ligase -
  SMU_RS04655 (SMU.1011) citG 966166..967056 (-) 891 WP_002263234.1 triphosphoribosyl-dephospho-CoA synthase CitG -
  SMU_RS04660 (SMU.1012c) - 967062..967751 (-) 690 WP_002263233.1 GntR family transcriptional regulator -

Sequence


Protein


Download         Length: 223 a.a.        Molecular weight: 25802.90 Da        Isoelectric Point: 5.1691

>NTDB_id=22972 SMU_RS04640 WP_002263237.1 963169..963840(+) (braR) [Streptococcus mutans UA159]
MLKQEKIYLVEDDTTIVNLLKNHLGQHYQVKSVDNFRAILQEVKEFKPDLILMDITLPYFNGFYWTTEIRKSMTMPIIFI
SSADEEMNAVMAMNMGGDDFLSKPFSLPILDAKIAAFLRRANEFTKQGHQIEEFELTLDGVFSNLERQETIQLTPTETKI
LSLLIDYKGEVVTKEALLNRLWEGEEFIDQNTLSVNMTRLRKKVLSVSFDKIHTVRGVGYLIK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=22972 SMU_RS04640 WP_002263237.1 963169..963840(+) (braR) [Streptococcus mutans UA159]
ATGCTAAAGCAAGAAAAAATTTACTTGGTTGAAGATGATACAACCATTGTCAATCTTTTAAAGAATCATTTGGGACAACA
CTATCAAGTTAAAAGCGTTGATAACTTTAGGGCTATCTTGCAAGAAGTTAAAGAATTTAAACCCGATTTAATTCTGATGG
ATATTACTTTGCCCTATTTCAATGGCTTTTATTGGACTACTGAAATCAGAAAGAGCATGACCATGCCCATTATCTTTATT
TCCAGTGCTGATGAAGAAATGAATGCAGTAATGGCTATGAATATGGGAGGTGATGATTTTTTGAGCAAGCCTTTCTCGCT
GCCTATTTTGGATGCCAAAATCGCTGCTTTCTTGCGCCGTGCTAACGAGTTCACTAAGCAAGGCCATCAAATTGAAGAGT
TTGAATTAACGTTAGATGGTGTATTCTCAAATTTAGAAAGACAAGAGACTATCCAATTGACTCCAACAGAAACGAAAATT
CTTTCCTTACTTATTGATTATAAAGGAGAGGTTGTCACTAAGGAAGCTCTTCTCAACCGACTATGGGAGGGAGAGGAATT
TATTGATCAAAACACGCTTAGTGTTAATATGACACGTCTTCGTAAAAAGGTTCTATCAGTAAGTTTTGATAAGATTCATA
CAGTAAGAGGAGTAGGGTATTTAATTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8DUD1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

43.498

100

0.435


Multiple sequence alignment