Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA919_RS02180 Genome accession   NZ_CP021286
Coordinates   469966..470445 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila subsp. pneumophila strain Albuquerque     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 464966..475445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA919_RS02140 rplO 465098..465532 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  CA919_RS02145 secY 465535..466863 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  CA919_RS02150 rpmJ 466880..466993 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  CA919_RS02155 rpsM 467071..467427 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  CA919_RS02160 rpsK 467451..467849 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  CA919_RS02165 rpsD 467866..468486 (+) 621 WP_011213013.1 30S ribosomal protein S4 -
  CA919_RS02170 rpoA 468505..469497 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  CA919_RS02175 rplQ 469516..469899 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  CA919_RS02180 ssb 469966..470445 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  CA919_RS02185 - 470529..471896 (-) 1368 WP_011213017.1 MFS transporter -
  CA919_RS02190 fabL 472058..472816 (+) 759 WP_011213018.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CA919_RS02195 - 472887..473300 (+) 414 WP_010946108.1 acyl carrier protein -
  CA919_RS02200 - 473300..474196 (+) 897 WP_011213019.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=229696 CA919_RS02180 WP_011213016.1 469966..470445(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=229696 CA919_RS02180 WP_011213016.1 469966..470445(-) (ssb) [Legionella pneumophila subsp. pneumophila strain Albuquerque]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGATAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGCCAAGATAGATATACAACTGAAATTGTTGCGTCTGATATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACCAATTACGACGACATGCCTTCATTTCAGGGATCCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACTGCACAAGATGCTTTTGATGAGTTAGATGATGACATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment