Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   CA921_RS12435 Genome accession   NZ_CP021283
Coordinates   2768146..2769408 (+) Length   420 a.a.
NCBI ID   WP_038839484.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2763146..2774408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS12425 ceg32 2764034..2766862 (+) 2829 WP_061691848.1 Dot/Icm T4SS effector Ceg32/SidI -
  CA921_RS12430 mesI 2766864..2767751 (+) 888 WP_072402290.1 Dot/Icm T4SS metaeffector MesI -
  CA921_RS12435 lqsT 2768146..2769408 (+) 1263 WP_038839484.1 sensor histidine kinase Regulator
  CA921_RS12440 - 2769456..2770151 (-) 696 WP_010948209.1 iron-containing redox enzyme family protein -
  CA921_RS12445 sdjA 2770548..2772971 (-) 2424 WP_061691849.1 Dot/Icm T4SS effector SdjA -
  CA921_RS12450 dupB 2773042..2774238 (-) 1197 WP_080449381.1 Dot/Icm T4SS effector deubiquitinase DupB/LaiF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 48629.01 Da        Isoelectric Point: 7.9744

>NTDB_id=229687 CA921_RS12435 WP_038839484.1 2768146..2769408(+) (lqsT) [Legionella pneumophila subsp. pneumophila strain Allentown]
MQRLKNIFTAIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPRQLLK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALVLLVSGVGLAFFHFYILSNNQFVYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETHKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=229687 CA921_RS12435 WP_038839484.1 2768146..2769408(+) (lqsT) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGCAAAGGTTAAAAAATATATTTACTGCAATTTACCAATATTTATTAAAAGAAACTGAAGATGCAAGCCACCAAATCAC
TTTATTTGGCATCGTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAGCATTTTCAACTGACAGAAG
AATTTATTTTACGCATCACTGCAGCCCTCCTCTGTGCCTGTTTGGCATTTAATCAATTTTGGCCAAGACAATTATTAAAA
TTTCTACCTGTTTTTTGGTATATAGTTCTTCTCTTTTGTTTACCTTACTTTTTTGCTTATTTGACTCTCATAAACAATGG
CTCGACTCTTTGGCTAATGAATTGCGTATCCGCTATCTTTTTTCTTTTATTAGTTTCCAGTGTGTTGGGAGCTCTTGTAT
TGCTTGTATCAGGTGTTGGACTTGCTTTTTTTCATTTTTATATTTTGTCAAATAATCAGTTTGTCTATATCCCAGGAACC
ATATCACTTTTTAGTTTAATTGTTACGTTTATTGCAGCAATAATCATTGGTGCTTTGTTTGCACGAGATAGAGAAATTAC
CTATGCCGGACGTTTATCGGGTATGCGCATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCGCTTGCCAGTATTT
ATTTACAAGCCGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGACCTGAAGGAAAATTTA
AGCAAAATTACTCGCGGTATAGAAATGAGTAATCAATTAATTCGTATGCAATTAAATAATATTCAACGAGACAAATTAGA
TACCAGTACATTTTCGATTTATTCCATCAAAAAATTACTCAAGGCGTCTTTAGAAGAATACCCTTTCAAAGAAAATCAAA
AATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGTTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCCATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTACCTCCATATAAAAGATACAGCTAAAGGTTTAAATCATAAAGAATATGAAAAAATATTTGATTTCT
TCTATTCTGGCAGAAAAGAAGGAACTGGTTTAGGCTTGGCCTATTGTAAACTTCTGATGCAAGCAGCAGGTGGTGATATT
TCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTCCCCAAAATTGATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(310-417)

His Kinase A (phospho-acceptor) domain (HisKA)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

99.524

100

0.995

Multiple sequence alignment