Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA921_RS09680 Genome accession   NZ_CP021283
Coordinates   2152037..2152351 (-) Length   104 a.a.
NCBI ID   WP_061691663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Allentown     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2147037..2157351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA921_RS09655 - 2147495..2147995 (-) 501 WP_061691666.1 hypothetical protein -
  CA921_RS09660 - 2148454..2149314 (+) 861 WP_027265082.1 polysaccharide deacetylase family protein -
  CA921_RS09665 - 2149432..2150628 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CA921_RS09670 lpp1976 2150738..2151295 (-) 558 WP_061691665.1 hypothetical protein Machinery gene
  CA921_RS09675 lpp1977 2151292..2152098 (-) 807 WP_061691664.1 PilW family protein Machinery gene
  CA921_RS09680 lpp1978 2152037..2152351 (-) 315 WP_061691663.1 type IV pilus modification PilV family protein Machinery gene
  CA921_RS09685 hisC 2152511..2153620 (+) 1110 WP_061691662.1 histidinol-phosphate transaminase -
  CA921_RS09690 - 2153657..2153998 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA921_RS09695 secF 2154190..2155107 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  CA921_RS09700 secD 2155120..2156976 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  CA921_RS09705 yajC 2156998..2157333 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12335.42 Da        Isoelectric Point: 8.4863

>NTDB_id=229682 CA921_RS09680 WP_061691663.1 2152037..2152351(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Allentown]
MSKHQGFTLLEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKSQSIIRFYELDAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229682 CA921_RS09680 WP_061691663.1 2152037..2152351(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Allentown]
ATGAGCAAGCATCAGGGTTTCACTCTATTGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTCG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACATGGTTTAAAAAAAGCCAGTCCATTATACGCTTCTATGAGCTGGATGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

93.269

100

0.933
  lpp1978 Legionella pneumophila str. Paris

91.346

100

0.913

Multiple sequence alignment