Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA924_RS09960 Genome accession   NZ_CP021281
Coordinates   2187705..2188019 (-) Length   104 a.a.
NCBI ID   WP_011214248.1    Uniprot ID   A0A3A6V5J7
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2182705..2193019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS09935 - 2183130..2183630 (-) 501 WP_011214243.1 hypothetical protein -
  CA924_RS09940 - 2184122..2184982 (+) 861 WP_011214244.1 polysaccharide deacetylase family protein -
  CA924_RS09945 - 2185100..2186296 (-) 1197 WP_011214245.1 murein transglycosylase A -
  CA924_RS09950 lpp1976 2186406..2186963 (-) 558 WP_011214246.1 hypothetical protein Machinery gene
  CA924_RS09955 lpp1977 2186960..2187766 (-) 807 WP_011214247.1 hypothetical protein Machinery gene
  CA924_RS09960 lpp1978 2187705..2188019 (-) 315 WP_011214248.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA924_RS09965 hisC 2188179..2189288 (+) 1110 WP_011214249.1 histidinol-phosphate transaminase -
  CA924_RS09970 - 2189325..2189666 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA924_RS09980 secF 2189844..2190761 (-) 918 WP_061724603.1 protein translocase subunit SecF -
  CA924_RS09985 secD 2190774..2192630 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  CA924_RS09990 yajC 2192652..2192987 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12267.42 Da        Isoelectric Point: 10.0591

>NTDB_id=229641 CA924_RS09960 WP_011214248.1 2187705..2188019(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Flint]
MSKHKGFTLMEVLMSLMLMTTVVLMLVDQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229641 CA924_RS09960 WP_011214248.1 2187705..2188019(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGAGCAAGCATAAGGGTTTCACTCTAATGGAAGTACTTATGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGATCAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A6V5J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila str. Paris

100

100

1
  lpp1978 Legionella pneumophila strain ERS1305867

98.077

100

0.981

Multiple sequence alignment