Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | CA929_RS03510 | Genome accession | NZ_CP021277 |
| Coordinates | 726840..727544 (-) | Length | 234 a.a. |
| NCBI ID | WP_027228452.1 | Uniprot ID | - |
| Organism | Legionella pneumophila subsp. fraseri strain D-4058 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 721840..732544
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA929_RS03495 | - | 724715..725227 (-) | 513 | WP_027228449.1 | pilus assembly protein | - |
| CA929_RS03500 | - | 725224..726291 (-) | 1068 | WP_106197192.1 | PilW family protein | - |
| CA929_RS03505 | pilV | 726288..726827 (-) | 540 | WP_027228451.1 | type IV pilus modification protein PilV | - |
| CA929_RS03510 | fimT | 726840..727544 (-) | 705 | WP_027228452.1 | GspH/FimT family pseudopilin | Machinery gene |
| CA929_RS03515 | - | 727758..728618 (-) | 861 | WP_192876626.1 | polysaccharide deacetylase family protein | - |
| CA929_RS03520 | - | 728795..730144 (-) | 1350 | WP_010946371.1 | lpg0634 family Dot/Icm T4SS effector | - |
| CA929_RS03525 | - | 730432..731913 (+) | 1482 | WP_010946372.1 | phospholipid carrier-dependent glycosyltransferase | - |
Sequence
Protein
Download Length: 234 a.a. Molecular weight: 24859.41 Da Isoelectric Point: 7.5611
>NTDB_id=229534 CA929_RS03510 WP_027228452.1 726840..727544(-) (fimT) [Legionella pneumophila subsp. fraseri strain D-4058]
MNKVIRESQRFTVRNIATLLFCVDTSVLPTQSNIAQNKETKIIYNDLCKDSFDTEIPLSSNPLSIAGFTLVELLVTLSVF
AIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPAAGTPTLL
KTHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTVCDNRGNAFARSAMVLATGFVQSGATPGQAVWNNGALNCP
MNKVIRESQRFTVRNIATLLFCVDTSVLPTQSNIAQNKETKIIYNDLCKDSFDTEIPLSSNPLSIAGFTLVELLVTLSVF
AIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPAAGTPTLL
KTHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTVCDNRGNAFARSAMVLATGFVQSGATPGQAVWNNGALNCP
Nucleotide
Download Length: 705 bp
>NTDB_id=229534 CA929_RS03510 WP_027228452.1 726840..727544(-) (fimT) [Legionella pneumophila subsp. fraseri strain D-4058]
TTGAATAAAGTGATAAGGGAATCACAAAGGTTCACTGTGCGCAATATCGCTACTTTATTATTTTGTGTGGACACAAGTGT
GTTGCCCACACAATCTAATATAGCACAAAATAAAGAAACAAAAATAATATACAATGACCTTTGCAAAGACAGCTTTGATA
CTGAAATCCCCCTTAGCAGTAACCCTCTATCCATAGCAGGATTCACGCTAGTTGAATTATTAGTCACCCTATCTGTTTTC
GCCATCATCTTAACTCTAATTGTGCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTCACT
GGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCCGTCAATGTGGCAGTATGTCCGTTAGGTTCACCGG
GTTCAACGGCCTGTGGCGCCAACTGGAGCTCAGGATGGATAGTAGTAACCCAACCCGCGGCCGGCACACCCACTCTTTTA
AAAACTCACCAAACCTCAGTGAATGACCCTGTTATCACATCTAATGTATCCAGTGTTGTTTTTGACCCGCATGGATTATC
AACTACCCAAAGTAACTTCACTGTGTGTGATAACCGAGGAAATGCGTTTGCCCGATCAGCAATGGTTTTAGCTACCGGAT
TTGTCCAATCTGGAGCAACACCCGGCCAGGCTGTCTGGAATAATGGGGCTCTAAACTGCCCTTAG
TTGAATAAAGTGATAAGGGAATCACAAAGGTTCACTGTGCGCAATATCGCTACTTTATTATTTTGTGTGGACACAAGTGT
GTTGCCCACACAATCTAATATAGCACAAAATAAAGAAACAAAAATAATATACAATGACCTTTGCAAAGACAGCTTTGATA
CTGAAATCCCCCTTAGCAGTAACCCTCTATCCATAGCAGGATTCACGCTAGTTGAATTATTAGTCACCCTATCTGTTTTC
GCCATCATCTTAACTCTAATTGTGCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTCACT
GGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCCGTCAATGTGGCAGTATGTCCGTTAGGTTCACCGG
GTTCAACGGCCTGTGGCGCCAACTGGAGCTCAGGATGGATAGTAGTAACCCAACCCGCGGCCGGCACACCCACTCTTTTA
AAAACTCACCAAACCTCAGTGAATGACCCTGTTATCACATCTAATGTATCCAGTGTTGTTTTTGACCCGCATGGATTATC
AACTACCCAAAGTAACTTCACTGTGTGTGATAACCGAGGAAATGCGTTTGCCCGATCAGCAATGGTTTTAGCTACCGGAT
TTGTCCAATCTGGAGCAACACCCGGCCAGGCTGTCTGGAATAATGGGGCTCTAAACTGCCCTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Legionella pneumophila strain Lp02 |
90.638 |
100 |
0.91 |