Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA920_RS10070 Genome accession   NZ_CP021269
Coordinates   2220187..2220501 (-) Length   104 a.a.
NCBI ID   WP_027224483.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Bellingham     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2215187..2225501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA920_RS10045 - 2215613..2216113 (-) 501 WP_014844283.1 hypothetical protein -
  CA920_RS10050 - 2216605..2217465 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  CA920_RS10055 - 2217582..2218778 (-) 1197 WP_027224485.1 murein transglycosylase A -
  CA920_RS10060 lpp1976 2218888..2219445 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  CA920_RS10065 lpp1977 2219442..2220248 (-) 807 WP_050598156.1 hypothetical protein Machinery gene
  CA920_RS10070 lpp1978 2220187..2220501 (-) 315 WP_027224483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA920_RS10075 hisC 2220661..2221770 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  CA920_RS10080 - 2221807..2222148 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA920_RS10085 secF 2222337..2223254 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  CA920_RS10090 secD 2223267..2225123 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  CA920_RS10095 yajC 2225145..2225480 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=229516 CA920_RS10070 WP_027224483.1 2220187..2220501(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Bellingham]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229516 CA920_RS10070 WP_027224483.1 2220187..2220501(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Bellingham]
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971

Multiple sequence alignment