Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CA920_RS00690 Genome accession   NZ_CP021269
Coordinates   153958..154650 (+) Length   230 a.a.
NCBI ID   WP_014843076.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Bellingham     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 148958..159650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA920_RS00670 - 149579..149755 (-) 177 WP_011945326.1 dodecin domain-containing protein -
  CA920_RS00675 - 149933..152401 (+) 2469 WP_014843073.1 hypothetical protein -
  CA920_RS00680 dapB 152505..153236 (-) 732 WP_014843074.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CA920_RS00685 - 153416..153601 (-) 186 WP_014843075.1 hypothetical protein -
  CA920_RS00690 rocC 153958..154650 (+) 693 WP_014843076.1 ProQ/FinO family protein Regulator
  CA920_RS00695 - 154651..155718 (+) 1068 WP_014843077.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25801.66 Da        Isoelectric Point: 10.6432

>NTDB_id=229488 CA920_RS00690 WP_014843076.1 153958..154650(+) (rocC) [Legionella pneumophila subsp. pneumophila strain Bellingham]
MRKQALHPRTAVINKAQKNQSKRARSDALSWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVEEVTEEEAEHASMKIKKRVEKSVKNARKLVNAKAANHSHVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=229488 CA920_RS00690 WP_014843076.1 153958..154650(+) (rocC) [Legionella pneumophila subsp. pneumophila strain Bellingham]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGTGCGCGATCTGA
CGCATTATCATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGAGGA
GGTTACTGAGGAAGAAGCGGAACATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
TAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

97.391

100

0.974

Multiple sequence alignment