Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   CA922_RS04910 Genome accession   NZ_CP021268
Coordinates   1067428..1068012 (+) Length   194 a.a.
NCBI ID   WP_011213356.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1062428..1073012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS04890 ravI 1063778..1064785 (-) 1008 WP_011946020.1 Dot/Icm T4SS effector RavI -
  CA922_RS04895 pilM 1065202..1066266 (+) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  CA922_RS04900 pilN 1066270..1066818 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  CA922_RS04905 pilO 1066832..1067431 (+) 600 WP_011213355.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA922_RS04910 pilP 1067428..1068012 (+) 585 WP_011213356.1 pilus assembly protein PilP Machinery gene
  CA922_RS04915 pilQ 1068016..1070112 (+) 2097 WP_027220941.1 type IV pilus secretin PilQ Machinery gene
  CA922_RS04920 aroK 1070558..1071085 (+) 528 WP_010946667.1 shikimate kinase AroK -
  CA922_RS04925 aroB 1071072..1072181 (+) 1110 WP_027220942.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22206.70 Da        Isoelectric Point: 10.0815

>NTDB_id=229457 CA922_RS04910 WP_011213356.1 1067428..1068012(+) (pilP) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MIIKNNQTLILGFFGNSLCTFLTSENFRKSLLTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDDRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIRQPDGQISRVRVGDYMGQNYGRII
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=229457 CA922_RS04910 WP_011213356.1 1067428..1068012(+) (pilP) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGATAATTAAAAATAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGTGTACTTTCCTCACCTCAGAGAATTT
CCGAAAAAGCCTATTGACGGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGATGATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAGGCAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTATATGGGACAAAATTATGGACGTATTATT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(49-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

100

100

1

Multiple sequence alignment