Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CA922_RS04300 Genome accession   NZ_CP021268
Coordinates   952114..952431 (+) Length   105 a.a.
NCBI ID   WP_014841214.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 947114..957431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS04280 - 947266..948705 (+) 1440 WP_014841211.1 cation:proton antiporter -
  CA922_RS04285 nadC 948702..949544 (+) 843 WP_014841212.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CA922_RS04290 - 949541..950632 (+) 1092 WP_010946544.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  CA922_RS04295 - 950607..952022 (+) 1416 WP_014841213.1 M20 family metallopeptidase -
  CA922_RS04300 comEA 952114..952431 (+) 318 WP_014841214.1 helix-hairpin-helix domain-containing protein Machinery gene
  CA922_RS04305 - 952627..953664 (+) 1038 WP_011213320.1 rod shape-determining protein -
  CA922_RS04310 mreC 953642..954550 (+) 909 WP_010946548.1 rod shape-determining protein MreC -
  CA922_RS04315 mreD 954547..955026 (+) 480 WP_010946549.1 rod shape-determining protein MreD -
  CA922_RS04320 - 954962..955564 (-) 603 WP_014841215.1 pseudouridine synthase -
  CA922_RS04325 - 955825..956523 (+) 699 WP_010946551.1 hypothetical protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11773.78 Da        Isoelectric Point: 10.5233

>NTDB_id=229453 CA922_RS04300 WP_014841214.1 952114..952431(+) (comEA) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MKARLIAILLSFIVIPFSSQAENEPQKTPAKQILVKGKINLNTADVYSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEEL
AEVKGIGQRFVDKNREKLKEVFVIN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=229453 CA922_RS04300 WP_014841214.1 952114..952431(+) (comEA) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGAAAGCAAGACTCATTGCTATTTTGTTGTCATTTATCGTTATCCCTTTCTCTTCTCAAGCTGAGAACGAGCCTCAAAA
AACTCCAGCTAAACAAATCCTTGTTAAGGGCAAGATTAATCTTAATACAGCGGATGTGTATTCTTTAACAGGCTCTTTTA
AAGGGATAGGAAAAAAACGGGCTGAAGCTATTATTGCTTATAGAGAGAATCATCAAGGGTTTAAATCTCTGGAAGAGCTT
GCGGAAGTCAAGGGTATAGGGCAGCGTTTTGTAGATAAAAATAGAGAAAAACTGAAAGAAGTTTTCGTTATTAATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Legionella pneumophila str. Paris

98.095

100

0.981
  comEA Legionella pneumophila strain ERS1305867

98.095

100

0.981

Multiple sequence alignment