Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CA922_RS03410 Genome accession   NZ_CP021268
Coordinates   711117..713324 (-) Length   735 a.a.
NCBI ID   WP_061638288.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain Birmingham     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 706117..718324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA922_RS03390 - 706623..708551 (-) 1929 WP_061638296.1 hypothetical protein -
  CA922_RS03395 - 708677..709069 (-) 393 WP_010946360.1 hypothetical protein -
  CA922_RS03400 - 709206..709583 (+) 378 WP_014841112.1 hypothetical protein -
  CA922_RS03405 - 709784..711091 (+) 1308 WP_061638289.1 tetratricopeptide repeat protein -
  CA922_RS03410 comEC 711117..713324 (-) 2208 WP_061638288.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CA922_RS03415 pilE 713402..713851 (-) 450 WP_072356079.1 type IV pilin protein Machinery gene
  CA922_RS03420 - 713863..717372 (-) 3510 WP_061638286.1 PilC/PilY family type IV pilus protein -
  CA922_RS03425 - 717385..717897 (-) 513 WP_061638284.1 pilus assembly protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 83212.78 Da        Isoelectric Point: 9.7067

>NTDB_id=229450 CA922_RS03410 WP_061638288.1 711117..713324(-) (comEC) [Legionella pneumophila subsp. pneumophila strain Birmingham]
MEIFCFLIGVLYAYTYNIYLTIAIPLLFYITPRYPIVMFFIAGCGFALIHQWIVSPKGMPDTQVITQAQLEGTIASIPMQ
RPNKTQFHFAIEKINNNPAQGLIQLNWYNKPPVLRAGQRWQLSVKLKKPRNFHNPGGFNYVRYLAARHIYWTGYIRYGNN
KLISNQPSSFSWLALREKIGDTLTKLAPDTETAGIIEALTLNVTHHISSDHWNLFRRTGTIHLFGISGEHIALVSGIFFI
VMRWIWSINYRCCLFLPANTIASIGGLLAALPYAFLAGFEPPVQRALIGCVLYTIYAIGKQRFTPWQIWRYALFLVLCIE
PHAAFLQGFYFSFLAVACLLLTHQRWPLKNYKKTLALQLSCLIGLMPLTLHWYSYGSINGFLANLFAIPLVSFLIVPLAL
MTMITSPFHWSWILMEPLAWLVALLLQGLTYVEQIAGINITWSITSVTMMLAMTAGLFLRVLLPVKPFKHLAILWIILPL
FPPRTAIYPGEALINILDVGQGLAVAIQTQHHVLLYDTGDSYFQGSDLGQMAIIPFFRSIGIKTIDKIVISHPDKDHKGG
LNSLEKEMKVNQLIVNDPYFYKRGSNCHSYPQWQWDGVSFRFFPIRESFNKKNNNSCILQVSNSAGRVLLTGDIEKAAEE
YLVRNYGSQLASEILVVPHHGSKTSSSYRFLLEVNPLYAIASLGFDNRFKFPHSKTLQSMKTLGITFFRTDECGMAGIKL
PASGKINKPTCMQAV

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=229450 CA922_RS03410 WP_061638288.1 711117..713324(-) (comEC) [Legionella pneumophila subsp. pneumophila strain Birmingham]
ATGGAAATTTTTTGCTTTTTAATAGGCGTACTTTATGCTTATACCTATAATATTTATCTAACTATTGCGATTCCTTTACT
CTTTTATATCACACCAAGATATCCAATTGTCATGTTCTTCATCGCCGGATGTGGCTTTGCCCTGATTCATCAGTGGATTG
TATCTCCCAAGGGCATGCCTGATACGCAAGTAATCACACAAGCCCAATTGGAAGGAACAATTGCTTCCATCCCCATGCAA
CGTCCTAACAAAACCCAATTCCATTTTGCAATTGAAAAAATTAATAATAACCCTGCTCAAGGCTTGATCCAATTAAACTG
GTATAACAAACCACCTGTCTTACGAGCTGGTCAGCGATGGCAACTTTCAGTGAAACTAAAAAAACCTCGTAACTTCCACA
ACCCGGGAGGTTTTAATTATGTACGTTACCTGGCGGCTCGTCATATCTATTGGACTGGCTATATTCGTTATGGGAATAAT
AAGCTAATTAGCAATCAACCCTCTTCTTTCAGTTGGTTAGCACTACGTGAAAAAATAGGGGATACTTTGACAAAACTGGC
ACCGGATACAGAAACGGCAGGCATCATCGAAGCATTGACGTTAAATGTTACTCACCATATCAGTTCAGATCATTGGAATT
TGTTCCGAAGAACAGGAACGATACATTTATTCGGGATTTCAGGAGAGCACATCGCTCTGGTCTCCGGCATTTTCTTTATA
GTAATGAGATGGATTTGGTCAATAAATTATCGATGCTGTTTGTTCTTACCGGCCAATACCATAGCTAGTATCGGTGGGCT
ACTGGCCGCCTTGCCCTATGCTTTTTTAGCTGGGTTTGAGCCTCCTGTACAACGTGCTTTAATTGGTTGTGTACTTTACA
CAATATACGCCATAGGAAAACAACGTTTTACACCATGGCAAATATGGAGATATGCCTTATTTTTAGTCTTGTGTATTGAG
CCCCATGCCGCATTCCTGCAAGGTTTTTATTTTTCATTTCTTGCCGTGGCCTGTCTTCTGTTGACTCATCAACGCTGGCC
ACTGAAAAATTATAAAAAAACACTGGCATTACAATTAAGTTGCCTCATTGGATTGATGCCTTTGACTCTCCATTGGTACT
CCTATGGTTCTATCAATGGATTTCTTGCCAATTTATTCGCCATACCTTTAGTCAGTTTTCTGATAGTACCCTTGGCTTTA
ATGACCATGATAACGAGTCCATTTCATTGGTCCTGGATATTGATGGAACCATTGGCGTGGCTTGTTGCCCTGTTACTGCA
AGGACTAACGTATGTTGAGCAAATAGCAGGGATCAATATCACCTGGTCCATCACCTCGGTAACAATGATGCTCGCTATGA
CAGCAGGTCTGTTTTTAAGGGTATTATTACCTGTCAAGCCATTCAAACACTTGGCTATCCTTTGGATTATCCTTCCCTTA
TTTCCACCTCGTACTGCAATTTATCCAGGGGAAGCATTAATTAATATTTTGGATGTTGGGCAAGGACTTGCCGTTGCGAT
ACAAACGCAACATCATGTTTTACTCTACGACACAGGAGATTCCTACTTTCAAGGGAGTGATTTAGGGCAAATGGCGATAA
TCCCCTTTTTCAGGTCAATTGGAATAAAAACAATTGACAAAATAGTAATAAGCCATCCCGATAAAGATCATAAGGGCGGA
TTAAATTCCCTTGAAAAAGAGATGAAAGTCAATCAATTAATAGTGAATGATCCCTATTTTTATAAACGTGGAAGTAATTG
TCATTCATACCCGCAATGGCAATGGGATGGTGTGAGTTTTCGTTTTTTCCCCATCAGGGAATCTTTCAATAAAAAAAATA
ACAATTCTTGTATCTTACAGGTAAGTAATTCGGCTGGCAGGGTTTTGTTAACGGGAGATATTGAAAAAGCAGCTGAGGAG
TACCTGGTAAGAAACTACGGCAGTCAGCTGGCATCCGAAATTTTAGTTGTGCCTCATCATGGGAGCAAAACGTCTTCATC
CTATCGATTTTTGCTGGAAGTAAACCCGCTTTATGCCATTGCATCCTTAGGATTTGATAATCGCTTCAAATTTCCACATT
CTAAAACTTTGCAAAGCATGAAAACATTAGGTATCACTTTTTTTAGAACAGACGAATGCGGAATGGCAGGAATCAAACTA
CCTGCGTCAGGTAAAATTAACAAACCAACCTGTATGCAGGCTGTATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-158)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-578)

Competence protein (Competence)

(199-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila strain Lp02

98.639

100

0.986
  comEC Legionella pneumophila strain ERS1305867

96.049

99.864

0.959

Multiple sequence alignment