Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   SMU_RS01810 Genome accession   NC_004350
Coordinates   349163..349798 (+) Length   211 a.a.
NCBI ID   WP_002264906.1    Uniprot ID   Q8DVU8
Organism   Streptococcus mutans UA159     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 344163..354798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS01805 (SMU.366) - 347579..349015 (+) 1437 WP_002262483.1 glutamate synthase subunit beta -
  SMU_RS01810 (SMU.367) lytF 349163..349798 (+) 636 WP_002264906.1 COG3942 and LysM peptidoglycan-binding domain-containing protein Regulator
  SMU_RS01815 (SMU.368c) rnjA 349984..351666 (-) 1683 WP_002310842.1 ribonuclease J1 -
  SMU_RS01820 (SMU.369c) - 351668..351898 (-) 231 WP_002268030.1 DNA-dependent RNA polymerase subunit epsilon -
  SMU_RS01825 (SMU.370) - 352360..353205 (+) 846 WP_002262479.1 ABC transporter ATP-binding protein -
  SMU_RS01830 (SMU.371) - 353198..353911 (+) 714 WP_002262478.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22470.57 Da        Isoelectric Point: 4.1028

>NTDB_id=22945 SMU_RS01810 WP_002264906.1 349163..349798(+) (lytF) [Streptococcus mutans UA159]
MKKQFLEKAVFTVAATAATVVLGNKMADADTYTLQEGDSFFSVAQRYHMDAYELASMNGKDITSLILPGQTLTVNGSAAP
DNQAAAPTDTTQATTETNDANANTYPVGQCTWGVKAVATWAGDWWGNGGDWASSASAQGYTVGNTPAVGSIMCWTDGGYG
HVAYVTAVGEDGKVQVLESNYKDQQWVDNYRGWFDPNNSGTPGSVSYIYPN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=22945 SMU_RS01810 WP_002264906.1 349163..349798(+) (lytF) [Streptococcus mutans UA159]
ATGAAAAAACAATTTTTGGAAAAAGCTGTGTTTACTGTTGCGGCTACGGCAGCAACAGTTGTTTTAGGAAATAAAATGGC
TGATGCAGACACTTATACTCTTCAAGAAGGAGATTCTTTTTTCAGTGTTGCTCAACGATATCATATGGATGCTTATGAGT
TAGCTTCTATGAATGGAAAAGATATTACCAGTCTGATTTTGCCGGGTCAGACTTTAACTGTTAATGGTTCGGCAGCACCG
GATAATCAGGCGGCAGCGCCAACTGACACTACGCAAGCAACCACTGAAACGAATGATGCGAATGCCAATACTTATCCTGT
TGGTCAATGTACTTGGGGGGTTAAAGCTGTTGCAACTTGGGCAGGCGACTGGTGGGGCAATGGCGGTGATTGGGCCTCTA
GTGCTTCTGCACAAGGTTACACTGTCGGTAACACTCCGGCAGTAGGGTCTATTATGTGTTGGACAGATGGTGGTTATGGA
CATGTTGCCTATGTCACAGCTGTTGGTGAAGATGGTAAAGTTCAAGTACTGGAATCCAATTATAAAGATCAACAATGGGT
TGATAACTATCGTGGTTGGTTTGATCCAAATAATAGTGGAACACCAGGCAGTGTCAGTTATATTTATCCTAACTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(102-180)

LysM domain (LysM)

(32-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

55.072

65.403

0.36