Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA923_RS09950 Genome accession   NZ_CP021267
Coordinates   2200789..2201103 (-) Length   104 a.a.
NCBI ID   WP_010947713.1    Uniprot ID   Q5ZU11
Organism   Legionella pneumophila subsp. pneumophila strain Burlington     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2195789..2206103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA923_RS09920 - 2196218..2196718 (-) 501 WP_015444348.1 hypothetical protein -
  CA923_RS09930 - 2197210..2198070 (+) 861 WP_015444347.1 polysaccharide deacetylase family protein -
  CA923_RS09935 - 2198187..2199380 (-) 1194 WP_010947710.1 murein transglycosylase A -
  CA923_RS09940 lpp1976 2199490..2200047 (-) 558 WP_010947711.1 hypothetical protein Machinery gene
  CA923_RS09945 lpp1977 2200044..2200850 (-) 807 WP_010947712.1 hypothetical protein Machinery gene
  CA923_RS09950 lpp1978 2200789..2201103 (-) 315 WP_010947713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA923_RS09955 hisC 2201263..2202372 (+) 1110 WP_015444344.1 histidinol-phosphate transaminase -
  CA923_RS09960 - 2202409..2202750 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA923_RS09965 secF 2202923..2203840 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  CA923_RS09970 secD 2203853..2205709 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  CA923_RS09975 yajC 2205731..2206066 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12330.42 Da        Isoelectric Point: 9.4609

>NTDB_id=229434 CA923_RS09950 WP_010947713.1 2200789..2201103(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Burlington]
MSKHQGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDIINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRSYDLDAH

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229434 CA923_RS09950 WP_010947713.1 2200789..2201103(-) (lpp1978) [Legionella pneumophila subsp. pneumophila strain Burlington]
ATGAGCAAGCATCAGGGTTTCACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATATAATCAATCATCTTATTTGGCGAATTCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGAGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCTCCTATGATCTGGATGCTCATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZU11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

96.154

100

0.962
  lpp1978 Legionella pneumophila str. Paris

94.231

100

0.942

Multiple sequence alignment