Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   CA923_RS04690 Genome accession   NZ_CP021267
Coordinates   1014035..1014619 (+) Length   194 a.a.
NCBI ID   WP_013101268.1    Uniprot ID   A0A378K473
Organism   Legionella pneumophila subsp. pneumophila strain Burlington     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1009035..1019619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA923_RS04670 ravI 1010385..1011392 (-) 1008 WP_011946020.1 Dot/Icm T4SS effector RavI -
  CA923_RS04675 pilM 1011809..1012873 (+) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  CA923_RS04680 pilN 1012877..1013425 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  CA923_RS04685 pilO 1013439..1014038 (+) 600 WP_013101267.1 type 4a pilus biogenesis protein PilO Machinery gene
  CA923_RS04690 pilP 1014035..1014619 (+) 585 WP_013101268.1 pilus assembly protein PilP Machinery gene
  CA923_RS04695 pilQ 1014623..1016719 (+) 2097 WP_011946023.1 type IV pilus secretin PilQ Machinery gene
  CA923_RS04700 aroK 1017166..1017693 (+) 528 WP_010946667.1 shikimate kinase AroK -
  CA923_RS04705 aroB 1017680..1018789 (+) 1110 WP_013101269.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 194 a.a.        Molecular weight: 22026.56 Da        Isoelectric Point: 10.4471

>NTDB_id=229415 CA923_RS04690 WP_013101268.1 1014035..1014619(+) (pilP) [Legionella pneumophila subsp. pneumophila strain Burlington]
MIIKNNQTLILGFFGNSLRVSLTAATFRKSLLTGLLVLLLSACSGDSSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRFP
ENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRIV
LIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=229415 CA923_RS04690 WP_013101268.1 1014035..1014619(+) (pilP) [Legionella pneumophila subsp. pneumophila strain Burlington]
ATGATAATTAAAAACAACCAGACTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGTGTTTCACTCACAGCAGCGACTTT
CCGAAAAAGTCTATTGACGGGGTTATTGGTACTATTACTTAGTGCCTGCTCTGGTGATAGCAGTGACCTTGTTAAGTACA
TCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTTCCA
GAAAACGACAATAGGCGAAATCCATTCAAACCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAAAAG
GCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCTGGG
CTCTGATTAAGCAACCTGACGGTCAGATTAGCCGTGTGAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATTGTT
TTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAATTAA
TTTGGATACTGGCAAGCAGGAGTAA

Domains


Predicted by InterproScan.

(49-188)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A378K473

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

94.33

100

0.943


Multiple sequence alignment