Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CA923_RS00690 Genome accession   NZ_CP021267
Coordinates   155787..156479 (+) Length   230 a.a.
NCBI ID   WP_010945894.1    Uniprot ID   Q5ZZ78
Organism   Legionella pneumophila subsp. pneumophila strain Burlington     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 150787..161479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA923_RS00670 - 151408..151584 (-) 177 WP_014840774.1 dodecin domain-containing protein -
  CA923_RS00675 - 151762..154230 (+) 2469 WP_010945891.1 hypothetical protein -
  CA923_RS00680 dapB 154334..155065 (-) 732 WP_010945892.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CA923_RS00685 - 155245..155430 (-) 186 WP_010945893.1 hypothetical protein -
  CA923_RS00690 rocC 155787..156479 (+) 693 WP_010945894.1 ProQ/FINO family protein Regulator
  CA923_RS00695 - 156480..157550 (+) 1071 WP_010945895.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25741.65 Da        Isoelectric Point: 10.7030

>NTDB_id=229405 CA923_RS00690 WP_010945894.1 155787..156479(+) (rocC) [Legionella pneumophila subsp. pneumophila strain Burlington]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVNAKAANHSHVNSQPSAVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=229405 CA923_RS00690 WP_010945894.1 155787..156479(+) (rocC) [Legionella pneumophila subsp. pneumophila strain Burlington]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGAGCGCGATCTGA
CGCATTATTATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATTGATTTGCACGGAAATCCAGTAGCCGA
GGTTACTGAGGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAGTCAGCCAAGTGCAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTCGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5ZZ78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

97.391

100

0.974

Multiple sequence alignment