Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CA926_RS00710 Genome accession   NZ_CP021265
Coordinates   160998..161690 (+) Length   230 a.a.
NCBI ID   WP_027228093.1    Uniprot ID   A0A2S6F9K3
Organism   Legionella pneumophila subsp. fraseri strain Los Angeles     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 155998..166690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA926_RS00690 - 156669..156845 (-) 177 WP_106228963.1 dodecin domain-containing protein -
  CA926_RS00695 - 157023..159491 (+) 2469 WP_028378858.1 hypothetical protein -
  CA926_RS00700 dapB 159589..160320 (-) 732 WP_027228091.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CA926_RS00705 - 160456..160641 (-) 186 WP_027223239.1 hypothetical protein -
  CA926_RS00710 rocC 160998..161690 (+) 693 WP_027228093.1 ProQ/FINO family protein Regulator
  CA926_RS00715 - 161691..162761 (+) 1071 WP_011945330.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25758.66 Da        Isoelectric Point: 10.7030

>NTDB_id=229323 CA926_RS00710 WP_027228093.1 160998..161690(+) (rocC) [Legionella pneumophila subsp. fraseri strain Los Angeles]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLQGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVSGKVVTHSHVNNQQSTISSIKPINS
IDSHPEPVLPVYPLRSSAYTSQNTAMQSAKPSSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=229323 CA926_RS00710 WP_027228093.1 160998..161690(+) (rocC) [Legionella pneumophila subsp. fraseri strain Los Angeles]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTTATCAATAAAGCACAAAAAAATCAATCCAAACGTGCACGATCAGA
CGCATTATTATGGCTTGCGGCTAATTTTCCTGAGGCATTTGATAATTCCTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGACATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGAGAAGCGGTCGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCGTGCCTGAAGGCACGTGAAGTCCGTATCGATTTGCAAGGAAATCCAGTGGCGGA
GGTTACGGAAGAAGAAGCTGAGCATGCTTCCATGAAAATTAAAAAACGTGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTAAGTGGAAAAGTAGTTACTCATTCGCATGTCAATAATCAACAGAGTACAATTTCCAGCATTAAGCCAATCAATTCG
ATTGACTCTCATCCTGAGCCTGTTTTGCCAGTATATCCCCTCAGGAGTTCTGCGTATACATCACAAAATACGGCCATGCA
ATCCGCCAAGCCATCATCCGTAGTAGTCAAACATAAAGCGCCAAAGCAATATGATCCGGATGCCGTAGCTCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6F9K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

90.87

100

0.909

Multiple sequence alignment