Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BC_RS09975 Genome accession   NC_004722
Coordinates   1944678..1944965 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus ATCC 14579     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939678..1949965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC_RS09955 (BC1992) - 1940852..1941049 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  BC_RS09960 (BC1993) - 1941081..1941542 (+) 462 WP_000024999.1 NUDIX hydrolase -
  BC_RS09965 (BC1994) nadE 1941592..1942410 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  BC_RS09970 (BC1995) - 1942681..1944561 (+) 1881 WP_001025992.1 ABC transporter permease -
  BC_RS09975 (BC1996) abrB 1944678..1944965 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BC_RS09980 (BC1997) - 1945241..1946188 (+) 948 WP_000099751.1 S8 family peptidase -
  BC_RS09985 (BC1998) - 1946230..1946538 (-) 309 WP_001259906.1 ArsR/SmtB family transcription factor -
  BC_RS09990 (BC1999) - 1946645..1947580 (+) 936 WP_000877963.1 aldo/keto reductase -
  BC_RS09995 (BC2000) - 1947628..1948802 (+) 1175 Protein_1927 MFS transporter -
  BC_RS28305 - 1948851..1949057 (+) 207 WP_001101741.1 hypothetical protein -
  BC_RS10005 (BC2001) - 1949201..1949563 (+) 363 WP_001198795.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=22923 BC_RS09975 WP_000648324.1 1944678..1944965(+) (abrB) [Bacillus cereus ATCC 14579]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=22923 BC_RS09975 WP_000648324.1 1944678..1944965(+) (abrB) [Bacillus cereus ATCC 14579]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment