Detailed information    

insolico Bioinformatically predicted

Overview

Name   lqsT   Type   Regulator
Locus tag   CA934_RS12910 Genome accession   NZ_CP021259
Coordinates   2847015..2848277 (+) Length   420 a.a.
NCBI ID   WP_106225719.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2842015..2853277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS12900 ceg32 2842888..2845719 (+) 2832 WP_106225717.1 Dot/Icm T4SS effector Ceg32/SidI -
  CA934_RS12905 mesI 2845721..2846608 (+) 888 WP_106225718.1 Dot/Icm T4SS effector metaeffector MesI -
  CA934_RS12910 lqsT 2847015..2848277 (+) 1263 WP_106225719.1 HAMP domain-containing sensor histidine kinase Regulator
  CA934_RS12915 - 2848325..2849020 (-) 696 WP_106225720.1 iron-containing redox enzyme family protein -
  CA934_RS12920 sdjA 2849357..2851780 (-) 2424 WP_106225721.1 Dot/Icm T4SS effector SdjA -
  CA934_RS12925 dupB 2851851..2853044 (-) 1194 WP_106225946.1 Dot/Icm T4SS effector deubiquitinase DupB/LaiF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 48588.04 Da        Isoelectric Point: 7.9660

>NTDB_id=229190 CA934_RS12910 WP_106225719.1 2847015..2848277(+) (lqsT) [Legionella pneumophila strain D-7708]
MQRLKNIFTVIYQYLLKETEDASHQITLFGIVMMINYPLFGVFWKLEHFQLTEEFILRITAALLCACLAFNQFWPRPLLK
FLPVFWYIVLLFCLPYFFAYLTLINNGSTLWLMNCVSAIFFLLLVSSVLGALVLLVSGVGLAFFHFYILSNNLFVYIPGT
ISLFSLIVTFIAAIIIGALFARDREITYAGRLSGMRMLAGSIAHDLRTPLASIYLQAELQELIVERLNNPEVQKDLKENL
SKITRGIEMSNQLIRMQLNNIQRDKLDTSTFSIYSIKKLLKASLEEYPFKENQKSLIHLNDKNDFSIWIDEVGFKNMMWN
LLKNSLEYIEETNKGEISIWLEQGWEKENFNYLHIKDTAKGLNHKEYEKIFDFFYSGRKEGTGLGLAYCKLLMQAAGGDI
SCKGKKNEFAHFTLKFPKID

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=229190 CA934_RS12910 WP_106225719.1 2847015..2848277(+) (lqsT) [Legionella pneumophila strain D-7708]
ATGCAAAGATTAAAAAATATATTTACTGTCATTTACCAATATTTATTAAAAGAAACCGAGGATGCAAGTCATCAAATCAC
TTTATTTGGCATCGTCATGATGATTAATTACCCTCTTTTCGGAGTTTTCTGGAAACTGGAACATTTTCAACTGACAGAAG
AGTTTATTTTACGTATCACCGCAGCTCTCCTCTGTGCCTGTTTGGCATTTAATCAATTTTGGCCAAGACCATTATTAAAA
TTTCTACCTGTTTTTTGGTATATAGTTTTGCTCTTTTGTTTGCCTTACTTTTTTGCTTATTTGACCCTTATAAATAATGG
TTCGACCCTTTGGCTAATGAATTGCGTATCAGCTATCTTTTTTCTTTTGTTAGTTTCCAGTGTATTGGGAGCTCTTGTGT
TACTTGTATCCGGTGTTGGGCTTGCTTTTTTTCATTTTTATATTTTATCAAATAATCTGTTTGTCTATATCCCGGGAACC
ATATCGCTTTTTAGTTTAATTGTTACATTTATTGCAGCAATCATCATTGGCGCCTTGTTTGCACGAGATAGAGAAATTAC
CTATGCCGGACGTTTATCAGGTATGCGTATGCTGGCTGGAAGTATCGCTCATGATTTAAGAACGCCACTTGCCAGTATTT
ATTTACAGGCTGAATTACAGGAATTGATTGTCGAAAGATTAAATAATCCAGAAGTTCAAAAGGATCTGAAGGAAAATTTA
AGCAAAATTACTCGTGGCATAGAAATGAGTAATCAATTAATTCGCATGCAATTAAATAATATTCAACGGGATAAATTAGA
TACCAGCACATTTTCGATTTATTCCATCAAAAAATTGCTCAAAGCGTCTTTAGAAGAATACCCTTTCAAAGAAAACCAAA
AATCATTGATTCATTTAAATGATAAAAATGATTTTTCCATATGGATTGATGAAGTGGGTTTTAAAAATATGATGTGGAAT
TTGCTAAAAAATAGTCTGGAATATATTGAGGAAACCAATAAAGGCGAAATCTCTATCTGGCTAGAACAAGGATGGGAGAA
AGAGAATTTTAATTACCTTCATATAAAGGATACCGCTAAAGGCTTAAATCATAAAGAATATGAAAAAATTTTTGATTTCT
TCTATTCTGGCAGAAAAGAAGGGACTGGTTTAGGCTTAGCCTATTGTAAACTTCTGATGCAAGCAGCAGGTGGTGATATT
TCCTGTAAAGGGAAAAAAAATGAATTCGCTCATTTCACTTTAAAATTTCCCAAAATTGATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(310-417)

His Kinase A (phospho-acceptor) domain (HisKA)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

98.571

100

0.986

Multiple sequence alignment