Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CA934_RS10515 Genome accession   NZ_CP021259
Coordinates   2307325..2307639 (-) Length   104 a.a.
NCBI ID   WP_027229196.1    Uniprot ID   A0A2S6EXS5
Organism   Legionella pneumophila strain D-7708     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2302325..2312639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS10490 - 2302519..2303379 (+) 861 WP_027229192.1 polysaccharide deacetylase family protein -
  CA934_RS10495 - 2303572..2304606 (-) 1035 WP_106224774.1 IS481 family transposase -
  CA934_RS10500 - 2304720..2305916 (-) 1197 WP_027229193.1 murein transglycosylase A -
  CA934_RS10505 lpp1976 2306026..2306583 (-) 558 WP_027229194.1 hypothetical protein Machinery gene
  CA934_RS10510 lpp1977 2306580..2307323 (-) 744 WP_027229195.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA934_RS10515 lpp1978 2307325..2307639 (-) 315 WP_027229196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CA934_RS10520 hisC 2307800..2308909 (+) 1110 WP_027229197.1 histidinol-phosphate transaminase -
  CA934_RS10525 - 2308947..2309288 (+) 342 WP_027229198.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CA934_RS10530 secF 2309463..2310380 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  CA934_RS10535 secD 2310393..2312249 (-) 1857 WP_010947717.1 protein translocase subunit SecD -
  CA934_RS10540 yajC 2312271..2312606 (-) 336 WP_027229201.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12391.56 Da        Isoelectric Point: 9.5369

>NTDB_id=229185 CA934_RS10515 WP_027229196.1 2307325..2307639(-) (lpp1978) [Legionella pneumophila strain D-7708]
MNKQKGFTLMEILMSLMLMTTVVLMLVEQQLKTRDLINHLIWRIHGSQFLDQVDEALYISENRLPLPPSNYHFDIRQSQK
KIILNVTWFKKNQSIIRSYDLDVN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=229185 CA934_RS10515 WP_027229196.1 2307325..2307639(-) (lpp1978) [Legionella pneumophila strain D-7708]
ATGAACAAGCAAAAGGGTTTCACCCTAATGGAAATACTTATGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATTTAATCAATCATCTTATATGGAGAATTCACGGTTCCCAATTTTTAGATCAAGTAG
ATGAAGCATTATATATCAGTGAGAATAGATTACCTCTGCCACCTTCAAATTATCATTTTGATATCAGGCAATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAGAAAAACCAGTCAATTATTCGTTCCTATGATCTGGACGTTAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6EXS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

90.385

100

0.904
  lpp1978 Legionella pneumophila str. Paris

90.385

100

0.904

Multiple sequence alignment