Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   CA934_RS00885 Genome accession   NZ_CP021259
Coordinates   191170..191862 (+) Length   230 a.a.
NCBI ID   WP_106224711.1    Uniprot ID   -
Organism   Legionella pneumophila strain D-7708     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 186170..196862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA934_RS00865 - 186841..187017 (-) 177 WP_071974612.1 dodecin domain-containing protein -
  CA934_RS00870 - 187195..189663 (+) 2469 WP_027228090.1 hypothetical protein -
  CA934_RS00875 dapB 189761..190492 (-) 732 WP_027228091.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CA934_RS00880 - 190628..190813 (-) 186 WP_027223239.1 hypothetical protein -
  CA934_RS00885 rocC 191170..191862 (+) 693 WP_106224711.1 ProQ/FINO family protein Regulator
  CA934_RS00890 - 191863..192933 (+) 1071 WP_106224712.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25772.68 Da        Isoelectric Point: 10.7030

>NTDB_id=229156 CA934_RS00885 WP_106224711.1 191170..191862(+) (rocC) [Legionella pneumophila strain D-7708]
MRKQALHPRTAVINKAQKNQSKRARSDALLWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLQGNPVAEVTEEEAEHASMKIKKRVEKSVKNARKQVSGKVVTHSHVNNQQSTISSIKPINS
IDSHPEPVLPVYPLRSSAYTSQNTAMQSAKPSSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEEKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=229156 CA934_RS00885 WP_106224711.1 191170..191862(+) (rocC) [Legionella pneumophila strain D-7708]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTTATCAATAAAGCACAAAAAAATCAATCCAAACGTGCACGATCAGA
CGCATTATTATGGCTTGCGGCTAATTTTCCTGAGGCATTTGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGACATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGAGAAGCGGTCGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCGTGCCTGAAGGCACGTGAAGTCCGTATCGATTTGCAAGGAAATCCAGTGGCGGA
GGTTACGGAAGAAGAAGCTGAGCATGCTTCTATGAAAATTAAAAAACGTGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
AAGTAAGTGGAAAAGTAGTTACTCATTCGCATGTCAATAATCAACAGAGTACAATTTCCAGCATTAAGCCAATCAATTCG
ATTGACTCTCATCCTGAGCCTGTTTTGCCAGTATATCCCCTCAGAAGTTCTGCGTATACATCACAAAATACGGCCATGCA
ATCCGCCAAGCCATCATCCGTAGTAGTCAAACATAAAGCGCCAAAGCAATATGATCCGGATGCCGTAGCTCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGAGAAGAAGGAAACAACAGAGTAA

Domains

Predicted by InterproScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

90.435

100

0.904

Multiple sequence alignment