Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CA264_RS17175 Genome accession   NZ_CP021235
Coordinates   3984930..3986309 (-) Length   459 a.a.
NCBI ID   WP_025608626.1    Uniprot ID   -
Organism   Pontibacter actiniarum strain DSM 19842     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3979930..3991309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA264_RS17160 (CA264_17110) - 3980774..3981796 (-) 1023 WP_025608623.1 SPASM domain-containing protein -
  CA264_RS17165 (CA264_17115) - 3981916..3983106 (-) 1191 WP_025608624.1 hypothetical protein -
  CA264_RS17170 (CA264_17120) - 3983322..3984740 (-) 1419 WP_025608625.1 TlpA family protein disulfide reductase -
  CA264_RS17175 (CA264_17125) radA 3984930..3986309 (-) 1380 WP_025608626.1 DNA repair protein RadA Machinery gene
  CA264_RS17180 (CA264_17130) - 3986505..3989426 (-) 2922 WP_025608627.1 CHASE domain-containing protein -
  CA264_RS17185 (CA264_17135) - 3989697..3990179 (+) 483 WP_025608628.1 DUF962 domain-containing protein -
  CA264_RS17190 (CA264_17140) - 3990204..3990920 (+) 717 WP_025608629.1 hypothetical protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50122.35 Da        Isoelectric Point: 5.8148

>NTDB_id=229075 CA264_RS17175 WP_025608626.1 3984930..3986309(-) (radA) [Pontibacter actiniarum strain DSM 19842]
MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREEVTPTTAWKVGTSSAQVSNKPKPIADISYQEQQRIVTQD
QELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALSLRGLKVLYVSGEESEQQIKMRAERLLAQTSDCFILTETGTQNI
FKQVEQIRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQ
FEGDRHMTYRILRTTKNRFGSTSELGIYEMMGSGLREVSNPSEILISQREDAFSGISIGATLEGNRPLLIEVQSLVSPAT
YGTPQRTSTGFDAKRLNMLLAVLEKRGGYRLGAQDVFLNIAGGLKVEDPALDLAVCASILSSFEDMPISNTACFAAEVGL
GGEVRAVNRVENRITEAEKLGFTDIYISKYNKKGVDLSKFSINVHAYGRLEEVFSSLFG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=229075 CA264_RS17175 WP_025608626.1 3984930..3986309(-) (radA) [Pontibacter actiniarum strain DSM 19842]
ATGGCTAAGATAAAAACATCCTACTTCTGCCAGAACTGCGGCGCACAGTCAGCCAAATGGATTGGCAAGTGCCCGGCCTG
CGGCGAGTGGAACACCTATGTAGAAGAGGTGGTGCAGCGCGAGGAGGTAACTCCTACCACCGCCTGGAAAGTGGGCACCA
GCTCTGCGCAGGTGTCCAACAAACCCAAACCCATTGCCGATATCAGTTATCAGGAGCAGCAGCGCATTGTTACGCAGGAC
CAGGAACTGAACCGGGTACTGGGCGGCGGCATTGTGCCGGGCTCCATGGTGCTGATCGGCGGCGAGCCGGGGATTGGCAA
AAGTACCCTGATGCTGCAGATCGCCCTGAGCCTGCGCGGCCTGAAGGTGCTCTATGTGAGCGGAGAGGAGAGCGAGCAGC
AGATTAAAATGCGCGCCGAGCGCCTCCTGGCCCAAACCTCCGACTGCTTTATCCTCACCGAAACCGGTACGCAGAATATT
TTTAAGCAGGTAGAGCAGATTCGCCCGCAGGTGCTGATCATCGACTCCATCCAAACCCTCCACTCCTCTTTCATAGAGGC
GGGTGCGGGCAGCGTCAGCCAGGTGCGCGAGTGTACGGCCGAGCTTTTGAAGTTTGCCAAAGAGAGCGGCACGCCGGTTT
TCCTGATCGGCCACATCACCAAAGAAGGGAATCTGGCCGGCCCGAAGATACTGGAGCACATGGTGGATACGGTGCTGCAA
TTTGAGGGCGACCGCCACATGACCTACCGTATCCTGCGCACCACAAAAAACCGCTTCGGTTCCACCTCCGAGCTGGGTAT
TTACGAGATGATGGGCTCAGGGCTGCGCGAAGTGAGCAACCCGTCGGAGATCCTGATTTCGCAGCGCGAGGACGCCTTTA
GCGGTATTTCTATCGGGGCCACGCTGGAAGGCAACCGCCCGTTGCTAATAGAGGTGCAGAGCCTGGTAAGCCCTGCTACC
TACGGCACACCACAACGCACCAGCACCGGTTTCGACGCCAAGCGCCTGAACATGCTGCTGGCCGTGCTGGAGAAGCGCGG
CGGCTACCGCCTGGGGGCGCAGGACGTGTTCCTGAACATTGCCGGGGGCCTGAAAGTGGAAGACCCGGCGCTGGACCTGG
CGGTGTGTGCCTCCATCCTCTCCTCGTTTGAGGACATGCCGATCTCGAACACCGCCTGCTTTGCCGCAGAGGTGGGCTTG
GGGGGCGAGGTGCGGGCTGTAAACCGCGTGGAGAACCGCATCACAGAGGCCGAAAAGCTGGGCTTCACAGACATCTACAT
TTCCAAGTATAACAAGAAAGGTGTGGATTTGAGCAAGTTCTCCATTAACGTGCATGCCTACGGCCGCCTGGAGGAAGTCT
TTAGCAGCCTGTTCGGGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-431)

AAA domain (AAA_25)

(72-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

50.538

100

0.512
  radA Streptococcus pneumoniae Rx1

50.538

100

0.512
  radA Streptococcus pneumoniae D39

50.538

100

0.512
  radA Streptococcus pneumoniae TIGR4

50.538

100

0.512
  radA Streptococcus mitis NCTC 12261

50.323

100

0.51
  radA Streptococcus mitis SK321

50.108

100

0.508
  radA Bacillus subtilis subsp. subtilis str. 168

52.752

94.989

0.501

Multiple sequence alignment