Detailed information NTG0229074

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C5F74_RS05570
• Genome accession: NZ_CP026939
• Coordinates: 1160211..1161203 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFS3313
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1155211..1166203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5F74_RS05540 (C5F74_05995)	ispD	1155272..1155982 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C5F74_RS05545 (C5F74_06000)	ispF	1155982..1156461 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C5F74_RS05550 (C5F74_06005)	truD	1156458..1157507 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C5F74_RS05555 (C5F74_06010)	surE	1157488..1158249 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C5F74_RS05560 (C5F74_06015)	pcm	1158243..1158869 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C5F74_RS05565 (C5F74_06020)	nlpD	1159054..1160148 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C5F74_RS05570 (C5F74_06025)	rpoS	1160211..1161203 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C5F74_RS05575 (C5F74_06030)	-	1161324..1161731 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C5F74_RS05580 (C5F74_06035)	-	1161878..1162471 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C5F74_RS05585 (C5F74_06040)	-	1162471..1163898 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C5F74_RS05590 (C5F74_06045)	-	1163909..1164145 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C5F74_RS05595 (C5F74_06050)	ygbN	1164184..1165548 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=229074 C5F74_RS05570 WP_000081550.1 1160211..1161203(+) (rpoS) [Escherichia coli strain CFS3313]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=229074 C5F74_RS05570 WP_000081550.1 1160211..1161203(+) (rpoS) [Escherichia coli strain CFS3313]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715