Detailed information NTG0228993

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C5F72_RS05705
• Genome accession: NZ_CP026935
• Coordinates: 1179961..1180953 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFS3292
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1174961..1185953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5F72_RS05675 (C5F72_06115)	ispD	1175022..1175732 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C5F72_RS05680 (C5F72_06120)	ispF	1175732..1176211 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C5F72_RS05685 (C5F72_06125)	truD	1176208..1177257 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C5F72_RS05690 (C5F72_06130)	surE	1177238..1177999 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C5F72_RS05695 (C5F72_06135)	pcm	1177993..1178619 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C5F72_RS05700 (C5F72_06140)	nlpD	1178804..1179898 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C5F72_RS05705 (C5F72_06145)	rpoS	1179961..1180953 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C5F72_RS05710 (C5F72_06150)	ygbN	1181047..1182411 (-)	1365	WP_000104459.1	GntP family transporter	-
C5F72_RS05715 (C5F72_06155)	ygbM	1182500..1183276 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
C5F72_RS05720 (C5F72_06160)	ygbL	1183281..1183919 (-)	639	WP_001278994.1	aldolase	-
C5F72_RS05725 (C5F72_06165)	otnK	1183916..1185178 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=228993 C5F72_RS05705 WP_000081550.1 1179961..1180953(+) (rpoS) [Escherichia coli strain CFS3292]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=228993 C5F72_RS05705 WP_000081550.1 1179961..1180953(+) (rpoS) [Escherichia coli strain CFS3292]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715