Detailed information NTG0228947

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C5F73_RS20385
• Genome accession: NZ_CP026932
• Coordinates: 4244093..4245085 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFS3273
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4239093..4250085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5F73_RS20365 (C5F73_21970)	otnK	4239868..4241130 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
C5F73_RS20370 (C5F73_21975)	ygbL	4241127..4241765 (+)	639	WP_001278994.1	aldolase	-
C5F73_RS20375 (C5F73_21980)	ygbM	4241770..4242546 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
C5F73_RS20380 (C5F73_21985)	ygbN	4242635..4243999 (+)	1365	WP_000104441.1	GntP family transporter	-
C5F73_RS20385 (C5F73_21990)	rpoS	4244093..4245085 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C5F73_RS20390 (C5F73_21995)	nlpD	4245148..4246242 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C5F73_RS20395 (C5F73_22000)	pcm	4246427..4247053 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C5F73_RS20400 (C5F73_22005)	surE	4247047..4247808 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C5F73_RS20405 (C5F73_22010)	truD	4247789..4248838 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C5F73_RS20410 (C5F73_22015)	ispF	4248835..4249314 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C5F73_RS20415 (C5F73_22020)	ispD	4249314..4250024 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=228947 C5F73_RS20385 WP_000081550.1 4244093..4245085(-) (rpoS) [Escherichia coli strain CFS3273]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=228947 C5F73_RS20385 WP_000081550.1 4244093..4245085(-) (rpoS) [Escherichia coli strain CFS3273]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715