Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C5F73_RS20110 Genome accession   NZ_CP026932
Coordinates   4191751..4192266 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain CFS3273     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4186751..4197266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F73_RS20085 (C5F73_21695) ygaZ 4187150..4187887 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  C5F73_RS20090 (C5F73_21700) ygaH 4187877..4188212 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C5F73_RS20095 (C5F73_21705) emrR 4188303..4188833 (+) 531 WP_000378447.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C5F73_RS20100 (C5F73_21710) emrA 4188960..4190132 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C5F73_RS20105 (C5F73_21715) emrB 4190149..4191687 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C5F73_RS20110 (C5F73_21720) luxS 4191751..4192266 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C5F73_RS20115 (C5F73_21725) gshA 4192416..4193972 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C5F73_RS20120 (C5F73_21730) yqaA 4194045..4194473 (-) 429 WP_001287454.1 YqaA family protein -
  C5F73_RS20125 (C5F73_21735) yqaB 4194470..4195036 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C5F73_RS20155 (C5F73_21765) csrA 4196494..4196679 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=228944 C5F73_RS20110 WP_001130211.1 4191751..4192266(-) (luxS) [Escherichia coli strain CFS3273]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=228944 C5F73_RS20110 WP_001130211.1 4191751..4192266(-) (luxS) [Escherichia coli strain CFS3273]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment