Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C5F73_RS16990 Genome accession   NZ_CP026932
Coordinates   3498789..3500216 (+) Length   475 a.a.
NCBI ID   WP_072280648.1    Uniprot ID   -
Organism   Escherichia coli strain CFS3273     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3493789..3505216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F73_RS16965 (C5F73_18365) - 3494781..3494963 (+) 183 WP_024167529.1 EutP/PduV family microcompartment system protein -
  C5F73_RS16970 (C5F73_18370) tmaR 3495064..3495393 (-) 330 WP_000450409.1 DUF496 family protein -
  C5F73_RS16975 (C5F73_18375) yeeA 3495565..3496623 (-) 1059 WP_001200892.1 FUSC family protein -
  C5F73_RS16980 (C5F73_18380) sbmC 3496822..3497295 (-) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  C5F73_RS16985 (C5F73_18385) dacD 3497414..3498580 (-) 1167 WP_061349290.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C5F73_RS16990 (C5F73_18390) sbcB 3498789..3500216 (+) 1428 WP_072280648.1 exodeoxyribonuclease I Machinery gene
  C5F73_RS16995 (C5F73_18395) tsuB 3500259..3500486 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C5F73_RS17000 (C5F73_18400) tsuA 3500500..3501558 (-) 1059 WP_159373432.1 thiosulfate utilization transporter TsuA/YeeE -
  C5F73_RS17005 (C5F73_18405) plaP 3501737..3503095 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C5F73_RS17010 (C5F73_18410) yoeI 3503085..3503147 (-) 63 WP_010723108.1 membrane protein YoeI -
  C5F73_RS17015 (C5F73_18415) yeeY 3503362..3504291 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C5F73_RS17020 (C5F73_18420) yeeZ 3504337..3505161 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4720

>NTDB_id=228934 C5F73_RS16990 WP_072280648.1 3498789..3500216(+) (sbcB) [Escherichia coli strain CFS3273]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=228934 C5F73_RS16990 WP_072280648.1 3498789..3500216(+) (sbcB) [Escherichia coli strain CFS3273]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581