Detailed information NTG0228823

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C4962_RS05530
• Genome accession: NZ_CP026929
• Coordinates: 1147117..1148109 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFS3246
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1142117..1153109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4962_RS05500 (C4962_05920)	ispD	1142178..1142888 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C4962_RS05505 (C4962_05925)	ispF	1142888..1143367 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C4962_RS05510 (C4962_05930)	truD	1143364..1144413 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C4962_RS05515 (C4962_05935)	surE	1144394..1145155 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C4962_RS05520 (C4962_05940)	pcm	1145149..1145775 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C4962_RS05525 (C4962_05945)	nlpD	1145960..1147054 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
C4962_RS05530 (C4962_05950)	rpoS	1147117..1148109 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C4962_RS05535 (C4962_05955)	ygbN	1148203..1149567 (-)	1365	WP_000104441.1	GntP family transporter	-
C4962_RS05540 (C4962_05960)	ygbM	1149656..1150432 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
C4962_RS05545 (C4962_05965)	ygbL	1150437..1151075 (-)	639	WP_001278994.1	aldolase	-
C4962_RS05550 (C4962_05970)	otnK	1151072..1152334 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=228823 C4962_RS05530 WP_000081550.1 1147117..1148109(+) (rpoS) [Escherichia coli strain CFS3246]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=228823 C4962_RS05530 WP_000081550.1 1147117..1148109(+) (rpoS) [Escherichia coli strain CFS3246]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715