Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   B9N48_RS13850 Genome accession   NZ_CP021169
Coordinates   2631427..2632173 (-) Length   248 a.a.
NCBI ID   WP_080474433.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2626427..2637173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS13825 mreC 2626833..2627705 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  B9N48_RS13830 mreB 2627736..2628749 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  B9N48_RS13835 radC 2628841..2629536 (-) 696 WP_014480455.1 DNA repair protein RadC -
  B9N48_RS13840 maf 2629573..2630142 (-) 570 WP_024572904.1 Maf family nucleotide pyrophosphatase -
  B9N48_RS13845 spoIIB 2630295..2631293 (-) 999 WP_086344157.1 stage II sporulation protein SpoIIB -
  B9N48_RS13850 comC 2631427..2632173 (-) 747 WP_080474433.1 A24 family peptidase Machinery gene
  B9N48_RS13855 folC 2632314..2633606 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  B9N48_RS13860 valS 2633666..2636308 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  B9N48_RS13865 - 2636756..2636947 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=228787 B9N48_RS13850 WP_080474433.1 2631427..2632173(-) (comC) [Bacillus subtilis strain TLO3]
MLSLLFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=228787 B9N48_RS13850 WP_080474433.1 2631427..2632173(-) (comC) [Bacillus subtilis strain TLO3]
ATGCTATCACTTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment