Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   At1D1609_RS09865 Genome accession   NZ_CP026924
Coordinates   1902527..1904632 (+) Length   701 a.a.
NCBI ID   WP_065655166.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1609     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897527..1909632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1609_RS09855 (At1D1609_18950) mfd 1898317..1901814 (-) 3498 WP_065655164.1 transcription-repair coupling factor -
  At1D1609_RS09860 (At1D1609_18960) - 1901819..1902130 (-) 312 WP_065655165.1 succinate dehydrogenase assembly factor 2 -
  At1D1609_RS09865 (At1D1609_18970) recG 1902527..1904632 (+) 2106 WP_065655166.1 ATP-dependent DNA helicase RecG Machinery gene
  At1D1609_RS09870 (At1D1609_18980) - 1904645..1904917 (+) 273 WP_065655167.1 hypothetical protein -
  At1D1609_RS09875 (At1D1609_18990) - 1904942..1905232 (-) 291 WP_065655168.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
  At1D1609_RS09880 (At1D1609_19000) - 1905229..1905474 (-) 246 WP_065655213.1 CopG family ribbon-helix-helix protein -
  At1D1609_RS09885 (At1D1609_19010) - 1905593..1906261 (-) 669 WP_059760288.1 DUF502 domain-containing protein -
  At1D1609_RS09890 (At1D1609_19020) - 1906275..1906778 (-) 504 WP_065655169.1 N-acetyltransferase -
  At1D1609_RS09895 (At1D1609_19030) glmS 1906775..1908601 (-) 1827 WP_065655170.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76449.06 Da        Isoelectric Point: 7.2727

>NTDB_id=228783 At1D1609_RS09865 WP_065655166.1 1902527..1904632(+) (recG) [Agrobacterium tumefaciens strain 1D1609]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRESADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRIDRHQ
PPPPGNRNAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPSVEAV
YPMTAGLSAKVLRKAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRARGDIAAKILSQLPFSLTASQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYRNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=228783 At1D1609_RS09865 WP_065655166.1 1902527..1904632(+) (recG) [Agrobacterium tumefaciens strain 1D1609]
ATGCGCCCGGCCATTCTTGATCCGCTGTTTGCCTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAACTTGCCGATCTTCT
GGCCAAGCTGCTCAGCCGGGAAAGCGCCGACGACACCCGCGTCATCGATCTCCTCTTCCACGCGCCATCCAACGTCATCG
ACCGCCGCAACCGCCCCGGCATTGCGCTGGCAGCACCCGGCGCCATTGTCACCATTCAGGGACGCATCGACCGCCACCAG
CCGCCACCGCCGGGAAACCGCAACGCGCCCTATCGCGTTTTTCTGCATGACGAAACCGGTGAACTGGCGCTGACCTTTTT
CCGCGCCAAGGGCGATTGGCTGTCCAAGGCCCTGCCCGTTGATGAAGAAGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTTTCCGAGGCGGAAAACCTGCCTTCGGTGGAAGCCGTT
TATCCCATGACCGCCGGGCTGTCTGCCAAGGTGCTGCGCAAGGCAATCGAAGGCGGGCTTTCAAAGCTGCCGGTTTTTCC
TGAATGGATCGATGAGACGCTCAAGACCCGCCAGGGATTCGGCGATGTGGCCTCGAGCTTCCGCGAGCTGCATGATCCGC
GCGACAGCGCCGATATCGAGCCGCAGGCACCGGCGCGCAGGCGGCTTGCCTATGACGAATTTCTGGCCGGACAATTGTCA
CTGGCGCTGGTGCGCCAGCGACTGCGCAAGGTGGCGGGCCAGCCGATCCGCGCCAGGGGCGATATCGCCGCAAAGATCCT
GTCGCAACTGCCCTTCTCGCTGACGGCGAGCCAGAGCGCTGCGGTGAAAGATATCCTGACCGACATGGCCGGCGAAGACC
GCATGTTGCGGCTGCTGCAGGGCGATGTCGGTGCCGGCAAGACCCTGGTGGCGCTGATGGCCATGGCGACCGCCGTGGAG
GCCGGCGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTCGCCCGCCAGCATTACGCCACCATATCCAAACTCGCTCA
GGCAGCCGGCATCACCGTCGAAGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGCCGCGAGATCGAGGAGCGCGTCGCTT
CCGGCGAAGCGCAGATCGTCATCGGCACGCATGCGCTGTTTCAGGACAGCGTGAGTTACAGGAACCTCGTGCTGGCAGTG
GTGGACGAACAACACCGTTTCGGTGTGCACCAGCGCCTGCGCCTCACCGCCAAGGGCATCACGCCACACATGCTGGTCAT
GACCGCCACGCCCATTCCGCGCACGCTGGTTCTGGCCGCTTTCGGCGATATGGATGTCTCCAAACTCACCGAAAAGCCGG
CGGGCCGCAAACCCATCCAGACCGTGACGATCCCCACCGAACGGATCGGCGATATTGTCGAGCGACTTCGTGCGGCGCTG
AAGGAAGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAAACGGAAGAATCCGACCTGATGTCGGCGGAAGAACG
GCACGCGGTTCTCTCGCAGATGCTCGGCGCCAATATCGGCCTCATCCACGGACGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTCGCCTTCAAGAACGGCGAAACCCGGCTGCTGGTAGCGACGACCGTGGTGGAAGTGGGCGTCGACGTGCCGGAC
GCGACGATCATGGTCATCGAACACGCCGAGCGTTTCGGCCTCGCCCAGCTTCACCAGCTGCGCGGCCGTGTGGGGCGCGG
CGACGAGGCCTCCACCTGCATCCTGCTCTATAAAGGCCCGCTCAGCGAAAACGGTCGTGCCCGGCTCTCCATCCTGCGCG
ACAGTGAAGACGGCTTCCTGATCGCCGAGGAGGATTTGAAGCTGCGCGGTGAAGGCGAGCTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGCTTCCGCATCGCAAGCCTCGAAGCCCATGCCGACCTTCTGGAAATCGCCCGCAAGGACGCAGCCTACGT
CATTGAGCGTGACCCCGAACTGACAGGTCCACGCGGCAATGCGCTACGTACCCTGCTCTATTTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(18-181)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-682)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

41.265

94.722

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.528

96.719

0.382
  recG/mmsA Streptococcus pneumoniae R36A

39.528

96.719

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

39.01

98.003

0.382

Multiple sequence alignment