Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   B9N48_RS12695 Genome accession   NZ_CP021169
Coordinates   2433511..2434278 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2428511..2439278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS12675 ppsR 2428685..2429497 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  B9N48_RS12680 ccpN 2429523..2430161 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  B9N48_RS12685 glyS 2430294..2432333 (-) 2040 WP_024572413.1 glycine--tRNA ligase subunit beta -
  B9N48_RS12690 glyQ 2432326..2433213 (-) 888 WP_086344615.1 glycine--tRNA ligase subunit alpha -
  B9N48_RS12695 recO 2433511..2434278 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  B9N48_RS12700 yqzL 2434315..2434458 (-) 144 WP_003230053.1 YqzL family protein -
  B9N48_RS12705 era 2434606..2435511 (-) 906 WP_003230051.1 GTPase Era -
  B9N48_RS12710 - 2435492..2435902 (-) 411 WP_003230049.1 cytidine deaminase -
  B9N48_RS12715 unpK 2436021..2436392 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  B9N48_RS12720 ybeY 2436373..2436846 (-) 474 WP_024572410.1 rRNA maturation RNase YbeY -
  B9N48_RS12725 pgpH 2436847..2438982 (-) 2136 WP_086344096.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=228779 B9N48_RS12695 WP_015384118.1 2433511..2434278(-) (recO) [Bacillus subtilis strain TLO3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=228779 B9N48_RS12695 WP_015384118.1 2433511..2434278(-) (recO) [Bacillus subtilis strain TLO3]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment