Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   At1D1609_RS07515 Genome accession   NZ_CP026924
Coordinates   1448546..1449268 (-) Length   240 a.a.
NCBI ID   WP_065653917.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 1D1609     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443546..1454268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  At1D1609_RS07500 (At1D1609_14340) gltA 1443547..1444836 (-) 1290 WP_003502585.1 citrate synthase -
  At1D1609_RS07505 (At1D1609_14350) - 1445144..1447573 (+) 2430 WP_065653919.1 ComEC/Rec2 family competence protein -
  At1D1609_RS07510 (At1D1609_14360) - 1447594..1448271 (-) 678 WP_065653918.1 glutathione S-transferase family protein -
  At1D1609_RS07515 (At1D1609_14370) dinR/lexA 1448546..1449268 (-) 723 WP_065653917.1 transcriptional repressor LexA Regulator
  At1D1609_RS07520 (At1D1609_14380) - 1449516..1450775 (-) 1260 WP_065653916.1 TRAP transporter large permease subunit -
  At1D1609_RS07525 (At1D1609_14390) - 1450772..1451305 (-) 534 WP_065653915.1 TRAP transporter small permease subunit -
  At1D1609_RS07530 (At1D1609_14400) - 1451426..1452433 (-) 1008 WP_065653914.1 TRAP transporter substrate-binding protein -
  At1D1609_RS07535 (At1D1609_14410) - 1452555..1453586 (-) 1032 WP_065653913.1 transketolase family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25955.86 Da        Isoelectric Point: 9.3311

>NTDB_id=228778 At1D1609_RS07515 WP_065653917.1 1448546..1449268(-) (dinR/lexA) [Agrobacterium tumefaciens strain 1D1609]
MLTRKQQELLLFIHERMKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIKLPEAYAPGARPQ
RGFSPSVIEGSLGKPKTPEPAPAQKAPANDLGGAVTVPVMGRIAAGVPISAIQNNTHDVAVPVDMLGSGEHYALEVKGDS
MIEAGIFDGDTVIIRNGNTANPGDIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVKIQGKLVGLIRRYH

Nucleotide


Download         Length: 723 bp        

>NTDB_id=228778 At1D1609_RS07515 WP_065653917.1 1448546..1449268(-) (dinR/lexA) [Agrobacterium tumefaciens strain 1D1609]
ATGCTCACGCGCAAACAGCAGGAATTGCTTCTCTTCATTCATGAAAGAATGAAAGAGTCCGGCGTGCCGCCCTCCTTCGA
TGAAATGAAGGACGCACTCGATCTTGCATCCAAATCCGGCATCCACCGGCTGATCACCGCACTCGAGGAGCGCGGCTTTA
TTCGCCGGCTACCTAACAGGGCGCGGGCGCTGGAAGTGATCAAATTGCCTGAGGCCTATGCGCCGGGTGCAAGGCCGCAG
CGCGGCTTCTCGCCGAGCGTCATCGAAGGCAGCCTCGGCAAACCGAAGACGCCGGAGCCGGCCCCTGCCCAGAAGGCGCC
GGCCAATGATCTCGGCGGTGCAGTCACCGTGCCGGTCATGGGCCGTATCGCAGCCGGTGTGCCGATTTCCGCCATCCAGA
ACAACACCCATGATGTGGCCGTGCCGGTCGACATGCTCGGCTCGGGCGAACATTACGCTCTTGAGGTCAAGGGCGACTCG
ATGATCGAAGCCGGCATTTTTGATGGCGATACCGTCATCATCCGCAACGGCAACACGGCCAATCCGGGCGACATCGTCGT
GGCACTGGTGGATGATGAAGAAGCGACCCTGAAGCGTTTCCGCCGCAAGGGAGCCTCCATCGCTCTCGAAGCCGCCAACC
CCGCTTATGAGACCCGCATCTTCGGACCGGACCGGGTGAAAATCCAGGGCAAGCTCGTAGGGCTGATCCGCCGTTACCAT
TAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(118-233)

LexA DNA binding domain (LexA_DNA_bind)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

36.25

100

0.363

Multiple sequence alignment