Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   B9N48_RS11165 Genome accession   NZ_CP021169
Coordinates   2167644..2168264 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2162644..2173264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS11125 ptsA 2163775..2164281 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  B9N48_RS11130 ypqA 2164419..2164838 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  B9N48_RS11135 sppG 2164859..2165236 (-) 378 WP_014477159.1 YppG family protein -
  B9N48_RS11140 yppF 2165424..2165612 (+) 189 WP_003230690.1 YppF family protein -
  B9N48_RS11145 yppE 2165651..2166022 (-) 372 WP_015714151.1 YppE family protein -
  B9N48_RS11150 yppD 2166068..2166313 (-) 246 WP_004398488.1 YppD family protein -
  B9N48_RS11155 sspM 2166512..2166616 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  B9N48_RS11160 yppC 2166641..2167603 (-) 963 WP_086344007.1 DUF2515 domain-containing protein -
  B9N48_RS11165 recU 2167644..2168264 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  B9N48_RS11170 - 2168286..2170497 (+) 2212 Protein_2150 transglycosylase domain-containing protein -
  B9N48_RS11175 ypoC 2170573..2171067 (-) 495 WP_009967579.1 YpoC family protein -
  B9N48_RS11180 nth 2171064..2171723 (-) 660 WP_009967580.1 endonuclease III -
  B9N48_RS11185 dnaD 2171742..2172440 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=228767 B9N48_RS11165 WP_004399067.1 2167644..2168264(+) (recU) [Bacillus subtilis strain TLO3]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=228767 B9N48_RS11165 WP_004399067.1 2167644..2168264(+) (recU) [Bacillus subtilis strain TLO3]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATTTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment