Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   B9N48_RS07390 Genome accession   NZ_CP021169
Coordinates   1396476..1396940 (-) Length   154 a.a.
NCBI ID   WP_086343783.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391476..1401940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS07370 kinA 1391943..1393763 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  B9N48_RS07375 dapX 1393773..1394954 (-) 1182 WP_014476653.1 aminotransferase A -
  B9N48_RS07380 - 1395156..1395317 (-) 162 WP_003245246.1 hypothetical protein -
  B9N48_RS07385 cheV 1395521..1396432 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  B9N48_RS07390 kre 1396476..1396940 (-) 465 WP_086343783.1 YkyB family protein Regulator
  B9N48_RS07395 ykuC 1397066..1398358 (-) 1293 WP_014479656.1 MFS transporter -
  B9N48_RS07400 ltdD 1398434..1398928 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  B9N48_RS07405 ppeE 1398985..1399845 (-) 861 WP_024573035.1 metallophosphoesterase -
  B9N48_RS07410 fadH 1399988..1400752 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17865.68 Da        Isoelectric Point: 10.3545

>NTDB_id=228760 B9N48_RS07390 WP_086343783.1 1396476..1396940(-) (kre) [Bacillus subtilis strain TLO3]
MDDHAYAKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=228760 B9N48_RS07390 WP_086343783.1 1396476..1396940(-) (kre) [Bacillus subtilis strain TLO3]
ATGGACGACCATGCATATGCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

99.351

100

0.994

Multiple sequence alignment