Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   B9N48_RS06080 Genome accession   NZ_CP021169
Coordinates   1163686..1164837 (+) Length   383 a.a.
NCBI ID   WP_086343707.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1158686..1169837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS06055 yjbB 1159357..1160574 (+) 1218 WP_086344583.1 MFS transporter -
  B9N48_RS06060 yjbC 1160738..1161316 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  B9N48_RS06065 spx 1161497..1161892 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  B9N48_RS06070 yjbE 1161924..1162592 (-) 669 WP_086343706.1 TerC family protein -
  B9N48_RS20550 - 1162762..1162902 (+) 141 WP_119122854.1 hypothetical protein -
  B9N48_RS06075 mecA 1162869..1163525 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  B9N48_RS20555 - 1163520..1163642 (-) 123 WP_003245684.1 hypothetical protein -
  B9N48_RS06080 coiA 1163686..1164837 (+) 1152 WP_086343707.1 competence protein CoiA Machinery gene
  B9N48_RS06085 pepF 1165067..1166896 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  B9N48_RS06090 - 1166934..1167101 (-) 168 WP_003244944.1 hypothetical protein -
  B9N48_RS06100 spxH 1167416..1168315 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  B9N48_RS06105 bhbI 1168312..1168710 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  B9N48_RS06110 cwlQ 1168962..1169696 (-) 735 WP_017695685.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44958.00 Da        Isoelectric Point: 9.8077

>NTDB_id=228756 B9N48_RS06080 WP_086343707.1 1163686..1164837(+) (coiA) [Bacillus subtilis strain TLO3]
MFSAVTEDGQLFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPEGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=228756 B9N48_RS06080 WP_086343707.1 1163686..1164837(+) (coiA) [Bacillus subtilis strain TLO3]
TTGTTTAGTGCTGTGACTGAAGACGGCCAACTGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACACAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTACTGAATCAGCCTGAAGGCGGCATACACTCAATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.123

97.389

0.956


Multiple sequence alignment