Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   B9N48_RS05520 Genome accession   NZ_CP021169
Coordinates   1052223..1052801 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain TLO3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047223..1057801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS05500 hemAT 1047734..1049032 (-) 1299 WP_024571731.1 heme-based aerotactic transducer HemAT -
  B9N48_RS05505 comW 1049171..1050700 (-) 1530 WP_014476355.1 FAD-dependent oxidoreductase -
  B9N48_RS05510 yhxC 1050812..1051669 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  B9N48_RS05515 yhzC 1051697..1051930 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  B9N48_RS05520 comK 1052223..1052801 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  B9N48_RS05525 yhxD 1052846..1053745 (-) 900 WP_086343663.1 SDR family oxidoreductase -
  B9N48_RS05530 yhjA 1053962..1054231 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  B9N48_RS05535 yhjB 1054275..1055744 (-) 1470 WP_086343664.1 sodium:solute symporter -
  B9N48_RS05540 yhjC 1055741..1055941 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  B9N48_RS05545 - 1056140..1056511 (-) 372 WP_014476361.1 hypothetical protein -
  B9N48_RS05550 yhjE 1056663..1057286 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  B9N48_RS05555 lepB 1057288..1057794 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=228748 B9N48_RS05520 WP_003245329.1 1052223..1052801(+) (comK) [Bacillus subtilis strain TLO3]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=228748 B9N48_RS05520 WP_003245329.1 1052223..1052801(+) (comK) [Bacillus subtilis strain TLO3]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment