Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   B9N48_RS00250 Genome accession   NZ_CP021169
Coordinates   44948..45238 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain TLO3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39948..50238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS00210 darA 39970..40299 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  B9N48_RS00215 yaaR 40312..40752 (+) 441 WP_009966249.1 YaaR family protein -
  B9N48_RS00220 holB 40764..41753 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  B9N48_RS00225 ricT 41756..42583 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  B9N48_RS00230 yabA 42598..42957 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  B9N48_RS00235 trmNF 43016..43759 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  B9N48_RS00240 yazA 43746..44045 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  B9N48_RS00245 rsmI 44020..44898 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  B9N48_RS00250 abrB 44948..45238 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  B9N48_RS00255 metG 45733..47727 (+) 1995 WP_015382561.1 methionine--tRNA ligase -
  B9N48_RS00260 dayD 47807..48574 (+) 768 WP_077671691.1 TatD family hydrolase -
  B9N48_RS00265 yabE 48730..50043 (+) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=228733 B9N48_RS00250 WP_003226760.1 44948..45238(-) (abrB) [Bacillus subtilis strain TLO3]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=228733 B9N48_RS00250 WP_003226760.1 44948..45238(-) (abrB) [Bacillus subtilis strain TLO3]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment