Detailed information NTG0228713

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MS7163_RS15950
• Genome accession: NZ_CP026853
• Coordinates: 3002748..3003740 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MS7163
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2997748..3008740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MS7163_RS15930 (MS7163_02944)	ygbM	2998379..2999155 (+)	777	WP_001136908.1	HPr family phosphocarrier protein	-
MS7163_RS15935 (MS7163_02945)	ygbN	2999244..3000608 (+)	1365	WP_000104443.1	GntP family transporter	-
MS7163_RS15940 (MS7163_02946)	-	3000751..3001794 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
MS7163_RS15945 (MS7163_02947)	-	3002019..3002570 (+)	552	WP_001179442.1	flavodoxin family protein	-
MS7163_RS15950 (MS7163_02948)	rpoS	3002748..3003740 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MS7163_RS15955 (MS7163_02949)	nlpD	3003803..3004897 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
MS7163_RS15960 (MS7163_02950)	pcm	3005082..3005708 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
MS7163_RS15965 (MS7163_02951)	surE	3005702..3006463 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MS7163_RS15970 (MS7163_02952)	truD	3006444..3007493 (-)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
MS7163_RS15975 (MS7163_02953)	ispF	3007490..3007969 (-)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MS7163_RS15980 (MS7163_02954)	ispD	3007969..3008679 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=228713 MS7163_RS15950 WP_000081550.1 3002748..3003740(-) (rpoS) [Escherichia coli strain MS7163]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=228713 MS7163_RS15950 WP_000081550.1 3002748..3003740(-) (rpoS) [Escherichia coli strain MS7163]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715