Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MS7163_RS11370 Genome accession   NZ_CP026853
Coordinates   2122503..2123930 (+) Length   475 a.a.
NCBI ID   WP_000980593.1    Uniprot ID   B7MDG5
Organism   Escherichia coli strain MS7163     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2117503..2128930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS7163_RS11330 (MS7163_02069) yeeW 2117686..2117880 (+) 195 WP_000988600.1 DUF5983 family protein -
  MS7163_RS28415 - 2117926..2118006 (+) 81 Protein_2084 hypothetical protein -
  MS7163_RS29160 - 2118295..2118441 (-) 147 Protein_2085 transposase domain-containing protein -
  MS7163_RS11345 (MS7163_02070) - 2118495..2118677 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MS7163_RS11350 (MS7163_02071) tmaR 2118778..2119107 (-) 330 WP_000450409.1 DUF496 family protein -
  MS7163_RS11355 (MS7163_02072) yeeA 2119279..2120337 (-) 1059 WP_001200891.1 FUSC family protein -
  MS7163_RS11360 (MS7163_02073) sbmC 2120536..2121009 (-) 474 WP_001105398.1 DNA gyrase inhibitor SbmC -
  MS7163_RS11365 (MS7163_02074) dacD 2121128..2122294 (-) 1167 WP_001514310.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MS7163_RS11370 (MS7163_02075) sbcB 2122503..2123930 (+) 1428 WP_000980593.1 exodeoxyribonuclease I Machinery gene
  MS7163_RS11375 (MS7163_02076) tsuB 2123973..2124200 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MS7163_RS11380 (MS7163_02077) tsuA 2124214..2125272 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  MS7163_RS11385 (MS7163_02078) plaP 2125451..2126809 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MS7163_RS11390 yoeI 2126799..2126861 (-) 63 WP_010723108.1 membrane protein YoeI -
  MS7163_RS11395 (MS7163_02079) yeeY 2127076..2128005 (-) 930 WP_000803341.1 LysR substrate-binding domain-containing protein -
  MS7163_RS11400 (MS7163_02080) yeeZ 2128051..2128875 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54481.77 Da        Isoelectric Point: 5.5939

>NTDB_id=228700 MS7163_RS11370 WP_000980593.1 2122503..2123930(+) (sbcB) [Escherichia coli strain MS7163]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGIHWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=228700 MS7163_RS11370 WP_000980593.1 2122503..2123930(+) (sbcB) [Escherichia coli strain MS7163]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATACACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATCGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7MDG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583