Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | AM457_RS01195 | Genome accession | NZ_CP026761 |
| Coordinates | 278192..278707 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain AR_0078 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 273192..283707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM457_RS01175 (AM457_01175) | - | 273522..274982 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| AM457_RS01180 (AM457_01180) | - | 275259..276464 (+) | 1206 | WP_000512696.1 | RtcB family protein | - |
| AM457_RS18555 | - | 276468..276626 (+) | 159 | WP_000692859.1 | hypothetical protein | - |
| AM457_RS01190 (AM457_01190) | omp38 | 276751..277812 (-) | 1062 | WP_000777885.1 | outer membrane protein Omp38 | - |
| AM457_RS01195 (AM457_01195) | fimT | 278192..278707 (+) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| AM457_RS01200 (AM457_01200) | - | 278816..279991 (+) | 1176 | WP_104889643.1 | thiolase family protein | - |
| AM457_RS01205 (AM457_01205) | - | 280118..280561 (+) | 444 | WP_001176585.1 | VOC family protein | - |
| AM457_RS01210 (AM457_01210) | - | 280604..280957 (-) | 354 | WP_000457783.1 | DMT family transporter | - |
| AM457_RS01215 (AM457_01215) | - | 281040..281525 (-) | 486 | WP_000935247.1 | DUF934 domain-containing protein | - |
| AM457_RS01220 (AM457_01220) | - | 281518..283161 (-) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=228606 AM457_RS01195 WP_000477151.1 278192..278707(+) (fimT) [Acinetobacter baumannii strain AR_0078]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=228606 AM457_RS01195 WP_000477151.1 278192..278707(+) (fimT) [Acinetobacter baumannii strain AR_0078]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |