Detailed information NTG0228581

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: CAY59_RS16010
• Genome accession: NZ_CP021145
• Coordinates: 3374968..3375975 (+)
• Length: 335 a.a.
• NCBI ID: WP_005429951.1
• Uniprot ID: A0A0A3FEU3
• Organism: Vibrio campbellii strain LA16-V1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3369968..3380975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAY59_RS15985 (CAY59_15800)	rplD	3369997..3370599 (-)	603	WP_005435074.1	50S ribosomal protein L4	-
CAY59_RS15990 (CAY59_15805)	rplC	3370617..3371246 (-)	630	WP_050909804.1	50S ribosomal protein L3	-
CAY59_RS15995 (CAY59_15810)	rpsJ	3371261..3371572 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
CAY59_RS16000 (CAY59_15815)	rpmE	3372046..3372264 (-)	219	WP_038890899.1	50S ribosomal protein L31	-
CAY59_RS16005 (CAY59_15820)	priA	3372560..3374761 (+)	2202	WP_050909803.1	primosomal protein N'	-
CAY59_RS16010 (CAY59_15825)	cytR	3374968..3375975 (+)	1008	WP_005429951.1	DNA-binding transcriptional regulator CytR	Regulator
CAY59_RS16015 (CAY59_15830)	-	3376144..3376695 (+)	552	WP_005429952.1	SPOR domain-containing protein	-
CAY59_RS16020 (CAY59_15835)	hslV	3376811..3377362 (+)	552	WP_005435051.1	ATP-dependent protease subunit HslV	-
CAY59_RS16025 (CAY59_15840)	hslU	3377392..3378724 (+)	1333	Protein_2934	HslU--HslV peptidase ATPase subunit	-
CAY59_RS16030 (CAY59_15845)	-	3379033..3379950 (+)	918	WP_086369745.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
CAY59_RS16035 (CAY59_15850)	rraA	3380026..3380553 (+)	528	WP_005528529.1	ribonuclease E activity regulator RraA	-
CAY59_RS16040 (CAY59_15855)	zapB	3380656..3380898 (-)	243	WP_005428165.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36912.44 Da
• Isoelectric Point: 6.1645

>NTDB_id=228581 CAY59_RS16010 WP_005429951.1 3374968..3375975(+) (cytR) [Vibrio campbellii strain LA16-V1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDSAALCQFRHQGYQQALRRAGINKEEQYTVIADFSFDGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=228581 CAY59_RS16010 WP_005429951.1 3374968..3375975(+) (cytR) [Vibrio campbellii strain LA16-V1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCGACGGTATCAAGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAGAGAGTGGAAGATGCCGTACTAGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAACT
TACGCAGAAATGAATCAAAAACCATTGTCACCATCGTACCGGACATTTGCGACCCGTACTTCTCAGAGATCATTCGTGGT
ATTGAAGATGCAGCAATGGAACACGGCTATCTTGTTCTATTGGGCGACAGTGGTCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTTAACTTAGTCTTTACTAAACAAGCAGATGGTATGCTTTTGCTTGGTACTGATCTGCCGTTTGATGTCAGCAAGCCTG
AACAGAAAAACCTGCCACCTATGGTGATGGCGTGTGAATTTGCTCCAGAGTTGGAACTGCCAACCGTTCATATCGATAAC
CTAACCTCAGCCTTTGAAGCAGTGAACTACCTTACTCAGTTAGGTCACAAGCGTATTGCTCAGATCTCTGGCCCAGACTC
TGCTGCTCTGTGTCAGTTCCGCCACCAAGGTTACCAACAAGCTCTGCGTCGTGCGGGTATTAATAAAGAGGAGCAATACA
CCGTTATTGCCGACTTCTCTTTTGACGGCGGAGTACAAGCCGTGCGTAAACTGCTTGAGCTTCCAGAGCCACCGACCGCC
CTTTTCTGTCACTGTGACACCATGGCAATTGGTGCCATTCAAGAAGCGAAACGCCTAGGTTTGCGTATTCCTCAAGACCT
GTCCGTTGTCGGCTTTGATGACATTCAGTTCGCTCAATACTGTGATCCACCGCTAACCACTATCTCTCAACCTCGTTATG
AGATCGGTCGCCAAGCGATGTTGATGATGCTGGAGTTGCTTAAAGGTCACGACGTACATTCTGGTTCTCGCCTACTTGAG
ACCAAACTTGTTGTACGTGGTAGTGCTGCGCCACCGCCACTTCGATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A0A3FEU3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	95.783	99.104	0.949
cytR	Vibrio cholerae C6706	90.964	99.104	0.901