Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CAY59_RS10235 Genome accession   NZ_CP021145
Coordinates   2121895..2123316 (+) Length   473 a.a.
NCBI ID   WP_086369455.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2116895..2128316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS10210 (CAY59_10110) - 2117288..2117899 (-) 612 WP_045398344.1 flavin reductase family protein -
  CAY59_RS10220 (CAY59_10120) - 2118565..2119260 (+) 696 WP_079402358.1 NAD(P)H-binding protein -
  CAY59_RS10225 (CAY59_10125) - 2119454..2120827 (+) 1374 WP_086369453.1 L-cystine transporter -
  CAY59_RS10230 (CAY59_10130) - 2121053..2121733 (+) 681 WP_086369454.1 DUF1826 domain-containing protein -
  CAY59_RS10235 (CAY59_10135) sbcB 2121895..2123316 (+) 1422 WP_086369455.1 exodeoxyribonuclease I Machinery gene
  CAY59_RS10240 (CAY59_10140) - 2123375..2123749 (+) 375 WP_086369456.1 CidA/LrgA family protein -
  CAY59_RS10245 (CAY59_10145) - 2123751..2124428 (+) 678 WP_005428010.1 LrgB family protein -
  CAY59_RS10250 (CAY59_10150) cdd 2124693..2125580 (+) 888 WP_005427951.1 cytidine deaminase -
  CAY59_RS10255 (CAY59_10155) - 2125644..2126342 (-) 699 WP_005428015.1 hypothetical protein -
  CAY59_RS10260 (CAY59_10160) purT 2126551..2127727 (+) 1177 Protein_1846 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54541.84 Da        Isoelectric Point: 4.9269

>NTDB_id=228571 CAY59_RS10235 WP_086369455.1 2121895..2123316(+) (sbcB) [Vibrio campbellii strain LA16-V1]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKATQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=228571 CAY59_RS10235 WP_086369455.1 2121895..2123316(+) (sbcB) [Vibrio campbellii strain LA16-V1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGGCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACTACTAGCCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCACTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAACTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACTCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment