Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CAY59_RS09625 Genome accession   NZ_CP021145
Coordinates   1976056..1977597 (+) Length   513 a.a.
NCBI ID   WP_045398542.1    Uniprot ID   -
Organism   Vibrio campbellii strain LA16-V1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971056..1982597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAY59_RS09600 (CAY59_09500) - 1971461..1971781 (+) 321 WP_005427675.1 STAS domain-containing protein -
  CAY59_RS09605 (CAY59_09505) - 1971807..1972661 (+) 855 WP_005427695.1 OmpA family protein -
  CAY59_RS09610 (CAY59_09510) - 1972658..1974760 (+) 2103 WP_045373956.1 SLBB domain-containing protein -
  CAY59_RS09615 (CAY59_09515) - 1974760..1975449 (+) 690 WP_045380390.1 AAA family ATPase -
  CAY59_RS09620 (CAY59_09520) - 1975462..1975845 (+) 384 WP_172840935.1 Hpt domain-containing protein -
  CAY59_RS09625 (CAY59_09525) luxO 1976056..1977597 (+) 1542 WP_045398542.1 sigma-54 dependent transcriptional regulator Regulator
  CAY59_RS09630 (CAY59_09530) - 1977572..1978648 (+) 1077 WP_086369393.1 glycosyltransferase -
  CAY59_RS09635 (CAY59_09535) - 1978801..1979985 (+) 1185 WP_005427592.1 glycosyltransferase -
  CAY59_RS09640 (CAY59_09540) - 1979996..1981168 (+) 1173 WP_086369394.1 glycosyltransferase family 4 protein -
  CAY59_RS09645 (CAY59_09545) - 1981161..1982582 (+) 1422 WP_086369395.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57544.48 Da        Isoelectric Point: 6.1668

>NTDB_id=228570 CAY59_RS09625 WP_045398542.1 1976056..1977597(+) (luxO) [Vibrio campbellii strain LA16-V1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEVPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPKKTPSVSPA
NAESVKETSFITEQTDSVQNEAFPTSEPTSATYSFSEPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=228570 CAY59_RS09625 WP_045398542.1 1976056..1977597(+) (luxO) [Vibrio campbellii strain LA16-V1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGTGAAGACGTTCTTGATTGGATTAATGAGAATGAGGTTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGTCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCGACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACTACCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGCGGCACACTATTCTTG
GACGAGCTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAAGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCAAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTTCCAACCTCGGA
ACCAACAAGCGCCACCTATTCTTTCTCTGAGCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAACGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481

Multiple sequence alignment